Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS325D01f
         (503 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    24   1.0  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    24   1.0  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   3.2  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 25/113 (22%), Positives = 43/113 (38%), Gaps = 1/113 (0%)
 Frame = +2

Query: 152 EERQDEHGYISRQFTRRYALPENCNPDTVESRLSSDGVLTVIAPRTPAATKNERAVPITQ 331
           +E  +EH    ++F  R A  E+ +P ++       G   +  P  P    +     ++ 
Sbjct: 397 QEDSEEH-LTPKRFHSRAASKEDLSPSSLADGARFGGSCLIHGPPLPPLPLHTECEDLSV 455

Query: 332 TGPVR-KEIKEPTAXAESNETRX*LSERCXSKKCYSXC*FYLHXSCVLVRLIA 487
           +G    +E+K P               R      +S C   +H SC+ VR IA
Sbjct: 456 SGEAGIEEVKSPVL-------------RSPPAFSHSRCPPEIHKSCICVRFIA 495


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 25/113 (22%), Positives = 43/113 (38%), Gaps = 1/113 (0%)
 Frame = +2

Query: 152 EERQDEHGYISRQFTRRYALPENCNPDTVESRLSSDGVLTVIAPRTPAATKNERAVPITQ 331
           +E  +EH    ++F  R A  E+ +P ++       G   +  P  P    +     ++ 
Sbjct: 397 QEDSEEH-LTPKRFHSRAASKEDLSPSSLADGARFGGSCLIHGPPLPPLPLHTECEDLSV 455

Query: 332 TGPVR-KEIKEPTAXAESNETRX*LSERCXSKKCYSXC*FYLHXSCVLVRLIA 487
           +G    +E+K P               R      +S C   +H SC+ VR IA
Sbjct: 456 SGEAGIEEVKSPVL-------------RSPPAFSHSRCPPEIHKSCICVRFIA 495


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -2

Query: 319 NSSLVLRGSRSPGSDHGQHSVRGQPRFDSVRVAVF 215
           N S ++ GS +PG+       +  P F   RVA +
Sbjct: 385 NRSGLVSGSSTPGTGREHDPAKFPPSFRISRVAAY 419


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,930
Number of Sequences: 438
Number of extensions: 1641
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13864083
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)