Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS325C11f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos...    28   0.97 
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su...    26   3.0  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    25   5.2  
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    25   6.8  
SPBC1734.14c |suc1||cyclin-dependent protein kinase regulatory s...    25   6.8  
SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyce...    25   9.0  

>SPBC18H10.03 |tif35||translation initiation factor
           eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 282

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +3

Query: 21  AAAGLREWTRSGEDAGRHRGRTKRSNNGGDGQTARLAL 134
           A A  ++W + G++AG++ G   R+ + G+    RL L
Sbjct: 64  AVAERKKWKKFGKEAGKNSGVDARTTSVGENVQLRLQL 101


>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +1

Query: 112 GRPLVLRCLVYGYP 153
           GRP  + CLVYG+P
Sbjct: 52  GRPWSISCLVYGFP 65


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -3

Query: 426 RRVHYPHVDPLAGP 385
           +RVH+  VDPL GP
Sbjct: 856 KRVHWQRVDPLPGP 869


>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
           Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -2

Query: 154 SGIRT-RGSARRAVCPSPPLLLRFVLPRCRP 65
           SGI + RG+   +V P  PL++R ++ R +P
Sbjct: 886 SGIASIRGTLMSSVLPDAPLIIRDMIIRLKP 916


>SPBC1734.14c |suc1||cyclin-dependent protein kinase regulatory
           subunit Suc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 113

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = -3

Query: 192 GTVKSSVPEDFRGRVSVHEAAQDERSAHLPRYYFVLFSRDAD 67
           GT++    E++RG         +    H+P  + +LF R+ D
Sbjct: 61  GTLRILQEEEWRGLGITQSLGWEMYEVHVPEPHILLFKREKD 102


>SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 473

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = -1

Query: 245 IRRTFSL-ASYNVLLYGTMGPLSPLYQKISGVGYPYTRQRKTSGLPISPVITSFCSP 78
           ++RT+     Y  +L GT+G     + +   +G      R  S  P S VIT F  P
Sbjct: 46  LKRTYKEHLEYGSVLGGTVGKRKNRHYEEDTIGSNALTVRADSENPSSQVITKFSDP 102


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,042,483
Number of Sequences: 5004
Number of extensions: 41043
Number of successful extensions: 145
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)