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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS325C11f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              41   7e-06
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    39   3e-05
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    39   3e-05
AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.            29   0.022
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         25   0.62 
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    25   0.62 
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    25   0.62 
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    24   0.82 
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              24   1.1  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   4.4  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   4.4  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    22   4.4  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    21   5.8  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   7.7  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 41.1 bits (92), Expect = 7e-06
 Identities = 26/84 (30%), Positives = 38/84 (45%)
 Frame = +1

Query: 55   VRTPVGIAGEQNEVITGEMGRPLVLRCLVYGYPTPEIFWYRGLNGPMVPYSSTLYEAREN 234
            VR P  IA   ++  T      + L CL  G P PE+ W   + G ++  S  L +  E 
Sbjct: 1273 VRVPAKIASFDDK-FTATYKEDVKLPCLAVGVPAPEVTW--KVRGAVLQSSDRLRQLPEG 1329

Query: 235  VLLIRQLIDEALGEYACQAYNGEG 306
             L I+++     GEY+C   N  G
Sbjct: 1330 SLFIKEVDRTDAGEYSCYVENTFG 1353



 Score = 32.3 bits (70), Expect = 0.003
 Identities = 29/103 (28%), Positives = 39/103 (37%), Gaps = 5/103 (4%)
 Frame = +1

Query: 97  ITGEMGRPLVLRCLVYGYPTPEIFWYRGLNGPMVPYSSTLYEARENV---LLIRQLIDEA 267
           ++ E    L L C   G+P P   WY+ + G        L E    V   L+IR+   E 
Sbjct: 222 LSTESKADLPLLCPAQGFPVPVHRWYKFIEGSSRRQPVQLNERVRQVSGTLIIREARVED 281

Query: 268 LGEYACQAYNGEG--SPATLLMEVRAYKQDDTPSDNKYLVSRP 390
            G+Y C   N  G  S  T+L        +  PS       RP
Sbjct: 282 SGKYLCIVNNSVGGESVETVLTVTAPLGAEIEPSTQTIDFGRP 324



 Score = 29.1 bits (62), Expect = 0.029
 Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
 Frame = +1

Query: 112 GRPLVLRCLVYGYPTPEIFWYRGLNGPMVPYSSTLYEARENVL-LIRQLIDEALGEYACQ 288
           G  L + C V GYP   I W R      +     ++     ++  + ++ D+A   Y C 
Sbjct: 505 GETLRVTCPVAGYPIESIVWERDTRVLPINRKQKVFPNGTLIIENVERMSDQA--TYTCV 562

Query: 289 AYNGEGSPATLLMEVR 336
           A N +G  A   +EV+
Sbjct: 563 ARNAQGYSARGTLEVQ 578



 Score = 28.7 bits (61), Expect = 0.038
 Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 7/78 (8%)
 Frame = +1

Query: 127 LRCLVYGYPTPEIFWYRGLNGPMVPY-----SSTLYEARENVLLIRQLIDEALGEYACQA 291
           + C   G+P P++ W +        Y     S+      +  L I  +     G Y C+A
Sbjct: 698 VECKADGFPKPQVTWKKAAGDTPGDYTDLKLSNPDISVEDGTLSINNIQKTNEGYYLCEA 757

Query: 292 YNGEGS--PATLLMEVRA 339
            NG G+   A + + V+A
Sbjct: 758 VNGIGAGLSAVIFISVQA 775



 Score = 28.3 bits (60), Expect = 0.051
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 100 TGEMGRPLVLRCLVYGYPTPEIFW 171
           T + G  + L+C+  G PTPEI W
Sbjct: 404 TLQPGPSMFLKCVASGNPTPEITW 427



 Score = 28.3 bits (60), Expect = 0.051
 Identities = 27/107 (25%), Positives = 41/107 (38%)
 Frame = +1

Query: 100  TGEMGRPLVLRCLVYGYPTPEIFWYRGLNGPMVPYSSTLYEARENVLLIRQLIDEALGEY 279
            T   G P VL+C   G     I W    N  + P S + Y  RE +     L +  L + 
Sbjct: 787  TARRGEPAVLQCEAQGEKPIGILWNMN-NKRLDPKSDSRYTIREEI-----LANGVLSDL 840

Query: 280  ACQAYNGEGSPATLLMEVRAYKQDDTPSDNKYLVSRPGEGVHVRVVD 420
            + +      S     +   A+  DDT S N  +   P     ++V+D
Sbjct: 841  SIKRTERSDSALFTCVATNAFGSDDT-SINMIVQEVPEVPYGLKVLD 886



 Score = 24.6 bits (51), Expect = 0.62
 Identities = 24/85 (28%), Positives = 32/85 (37%)
 Frame = +1

Query: 55  VRTPVGIAGEQNEVITGEMGRPLVLRCLVYGYPTPEIFWYRGLNGPMVPYSSTLYEAREN 234
           V  P+G   E +   T + GRP    C V G P   + W +    P+           E 
Sbjct: 304 VTAPLGAEIEPSTQ-TIDFGRPATFTCNVRGNPIKTVSWLKD-GKPL--------GLEEA 353

Query: 235 VLLIRQLIDEALGEYACQAYNGEGS 309
           VL I  +  E  G Y C   N + S
Sbjct: 354 VLRIESVKKEDKGMYQCFVRNDQES 378



 Score = 24.2 bits (50), Expect = 0.82
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +1

Query: 112 GRPLVLRCLVYGYPTPEIFWYR 177
           G   V+ C   G P P+I W R
Sbjct: 18  GTGAVVECQARGNPQPDIIWVR 39



 Score = 23.4 bits (48), Expect = 1.4
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +1

Query: 226 RENVLLIRQLIDEALGEYACQAYNGEGS 309
           R ++L+I  +     GEY C A N  G+
Sbjct: 639 RVSMLMISVITARHAGEYVCTAENAAGT 666


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 39.1 bits (87), Expect = 3e-05
 Identities = 23/105 (21%), Positives = 45/105 (42%), Gaps = 5/105 (4%)
 Frame = +1

Query: 97   ITGEMGRPLVLRCLVYGYPTPEIFWYRGLNGPMVPYSSTLYEARENV-----LLIRQLID 261
            ++ E  + + L C   G PTP I W +        Y      A   +     LL++ + +
Sbjct: 719  VSVERNKHVALHCQAQGVPTPTIVWKKATGSKSGEYEELRERAYTKILSNGTLLLQHVKE 778

Query: 262  EALGEYACQAYNGEGSPATLLMEVRAYKQDDTPSDNKYLVSRPGE 396
            +  G Y CQA NG GS    +++++        + ++ +  + G+
Sbjct: 779  DREGFYLCQASNGIGSGIGKVVQLKVNSSPYFAAPSRLVTVKKGD 823



 Score = 32.7 bits (71), Expect = 0.002
 Identities = 25/81 (30%), Positives = 32/81 (39%), Gaps = 3/81 (3%)
 Frame = +1

Query: 127 LRCLVYGYPTPEIFWYRGLNG-PMVPYSSTLYEARENVLLIRQLIDEALGEYACQAYN-- 297
           L C+    PTPE  WY      PM+  S        +VL +  +  E  G Y C A N  
Sbjct: 257 LVCVAQACPTPEYRWYAQTGSEPMLVLSGPRTRLLGSVLALEAVTLEDNGIYRCSASNPG 316

Query: 298 GEGSPATLLMEVRAYKQDDTP 360
           GE S    L+       + TP
Sbjct: 317 GEASAEIRLIVTAPLHVEVTP 337



 Score = 32.7 bits (71), Expect = 0.002
 Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
 Frame = +1

Query: 97  ITGEMGRPLVLRCLVYGYPTPEIFWYRGLNGPMVPYSSTLYEARENVLLIRQLIDEA-LG 273
           +T   G  L L+C V GYP  EI W R      +P         +  L+I  +  +   G
Sbjct: 528 VTAVAGETLRLKCPVAGYPIEEIKWERA--NRELPDDLRQKVLPDGTLVITSVQKKGDAG 585

Query: 274 EYACQAYNGEGSPA 315
            Y C A N +G  A
Sbjct: 586 VYTCSARNKQGHSA 599



 Score = 31.9 bits (69), Expect = 0.004
 Identities = 25/86 (29%), Positives = 35/86 (40%), Gaps = 2/86 (2%)
 Frame = +1

Query: 58   RTPVGIAGEQNEVITGEMGRPLVLRCLVYGYPTPEIFWYRGLNGPMVPYSST--LYEARE 231
            R P  I      V+    G    L C   G PT E  WY+G  G  +   ST  +     
Sbjct: 1311 RVPARITSFGGHVVRPWRGSA-TLACNAVGDPTRE--WYKG-QGEQIRTDSTRNIQILPS 1366

Query: 232  NVLLIRQLIDEALGEYACQAYNGEGS 309
              L++  L  +  G+Y CQ  N +G+
Sbjct: 1367 GELMLSNLQSQDGGDYTCQVENAQGN 1392



 Score = 28.7 bits (61), Expect = 0.038
 Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 9/78 (11%)
 Frame = +1

Query: 100 TGEMGRPLVLRCLVYGYPTPEIFWYRGLNGPMVP---------YSSTLYEARENVLLIRQ 252
           T + G  + L+C   G PTP++ W   L+G  +P         Y +   +   +V +   
Sbjct: 432 TLQPGPAVSLKCSAAGNPTPQVTW--ALDGFALPTNGRFMIGQYVTVHGDVISHVNISHV 489

Query: 253 LIDEALGEYACQAYNGEG 306
           ++++  GEY+C A N  G
Sbjct: 490 MVEDG-GEYSCMAENRAG 506



 Score = 23.0 bits (47), Expect = 1.9
 Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 9/88 (10%)
 Frame = +1

Query: 88   NEVITGEMGRPLVLRCLVYGYPTPEIFWYRG----LNGPMVPYSSTL-YEARENVLLIRQ 252
            + ++T + G    L C V+G     + W +G    LN P   Y  T+  E   + ++ + 
Sbjct: 814  SRLVTVKKGDTATLHCEVHGDTPVTVTWLKGGKIELN-PSTNYRVTVKREVTPDGVIAQL 872

Query: 253  LIDEA----LGEYACQAYNGEGSPATLL 324
             I  A     G Y CQA N  G    L+
Sbjct: 873  QISSAEASDSGAYFCQASNLYGRDQQLV 900


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 39.1 bits (87), Expect = 3e-05
 Identities = 23/105 (21%), Positives = 45/105 (42%), Gaps = 5/105 (4%)
 Frame = +1

Query: 97   ITGEMGRPLVLRCLVYGYPTPEIFWYRGLNGPMVPYSSTLYEARENV-----LLIRQLID 261
            ++ E  + + L C   G PTP I W +        Y      A   +     LL++ + +
Sbjct: 715  VSVERNKHVALHCQAQGVPTPTIVWKKATGSKSGEYEELRERAYTKILSNGTLLLQHVKE 774

Query: 262  EALGEYACQAYNGEGSPATLLMEVRAYKQDDTPSDNKYLVSRPGE 396
            +  G Y CQA NG GS    +++++        + ++ +  + G+
Sbjct: 775  DREGFYLCQASNGIGSGIGKVVQLKVNSSPYFAAPSRLVTVKKGD 819



 Score = 32.7 bits (71), Expect = 0.002
 Identities = 25/81 (30%), Positives = 32/81 (39%), Gaps = 3/81 (3%)
 Frame = +1

Query: 127 LRCLVYGYPTPEIFWYRGLNG-PMVPYSSTLYEARENVLLIRQLIDEALGEYACQAYN-- 297
           L C+    PTPE  WY      PM+  S        +VL +  +  E  G Y C A N  
Sbjct: 257 LVCVAQACPTPEYRWYAQTGSEPMLVLSGPRTRLLGSVLALEAVTLEDNGIYRCSASNPG 316

Query: 298 GEGSPATLLMEVRAYKQDDTP 360
           GE S    L+       + TP
Sbjct: 317 GEASAEIRLIVTAPLHVEVTP 337



 Score = 32.7 bits (71), Expect = 0.002
 Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
 Frame = +1

Query: 97  ITGEMGRPLVLRCLVYGYPTPEIFWYRGLNGPMVPYSSTLYEARENVLLIRQLIDEA-LG 273
           +T   G  L L+C V GYP  EI W R      +P         +  L+I  +  +   G
Sbjct: 528 VTAVAGETLRLKCPVAGYPIEEIKWERA--NRELPDDLRQKVLPDGTLVITSVQKKGDAG 585

Query: 274 EYACQAYNGEGSPA 315
            Y C A N +G  A
Sbjct: 586 VYTCSARNKQGHSA 599



 Score = 31.9 bits (69), Expect = 0.004
 Identities = 25/86 (29%), Positives = 35/86 (40%), Gaps = 2/86 (2%)
 Frame = +1

Query: 58   RTPVGIAGEQNEVITGEMGRPLVLRCLVYGYPTPEIFWYRGLNGPMVPYSST--LYEARE 231
            R P  I      V+    G    L C   G PT E  WY+G  G  +   ST  +     
Sbjct: 1307 RVPARITSFGGHVVRPWRGSA-TLACNAVGDPTRE--WYKG-QGEQIRTDSTRNIQILPS 1362

Query: 232  NVLLIRQLIDEALGEYACQAYNGEGS 309
              L++  L  +  G+Y CQ  N +G+
Sbjct: 1363 GELMLSNLQSQDGGDYTCQVENAQGN 1388



 Score = 28.7 bits (61), Expect = 0.038
 Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 9/78 (11%)
 Frame = +1

Query: 100 TGEMGRPLVLRCLVYGYPTPEIFWYRGLNGPMVP---------YSSTLYEARENVLLIRQ 252
           T + G  + L+C   G PTP++ W   L+G  +P         Y +   +   +V +   
Sbjct: 432 TLQPGPAVSLKCSAAGNPTPQVTW--ALDGFALPTNGRFMIGQYVTVHGDVISHVNISHV 489

Query: 253 LIDEALGEYACQAYNGEG 306
           ++++  GEY+C A N  G
Sbjct: 490 MVEDG-GEYSCMAENRAG 506



 Score = 23.4 bits (48), Expect = 1.4
 Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 3/66 (4%)
 Frame = +1

Query: 109 MGRPLVLRCLVYGYPTP-EIFWYRG--LNGPMVPYSSTLYEARENVLLIRQLIDEALGEY 279
           +G    L C V     P  I W +     GP      T  +   ++L+I  L  +  G Y
Sbjct: 624 LGERTTLTCSVTRGDLPLSISWLKDGRAMGPSERVHVTNMDQYNSILMIEHLSPDHNGNY 683

Query: 280 ACQAYN 297
           +C A N
Sbjct: 684 SCVARN 689



 Score = 23.0 bits (47), Expect = 1.9
 Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 9/88 (10%)
 Frame = +1

Query: 88   NEVITGEMGRPLVLRCLVYGYPTPEIFWYRG----LNGPMVPYSSTL-YEARENVLLIRQ 252
            + ++T + G    L C V+G     + W +G    LN P   Y  T+  E   + ++ + 
Sbjct: 810  SRLVTVKKGDTATLHCEVHGDTPVTVTWLKGGKIELN-PSTNYRVTVKREVTPDGVIAQL 868

Query: 253  LIDEA----LGEYACQAYNGEGSPATLL 324
             I  A     G Y CQA N  G    L+
Sbjct: 869  QISSAEASDSGAYFCQASNLYGRDQQLV 896


>AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.
          Length = 122

 Score = 29.5 bits (63), Expect = 0.022
 Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 9/72 (12%)
 Frame = +1

Query: 109 MGRPLVLRCLVYGYPTPEIFWYRGLNGPMVPYSSTLYEARE-----NVLLIRQLIDEA-- 267
           +GR +   C+  G+P PEI W   L   +  Y    ++  E     + L  +  ID A  
Sbjct: 36  LGRKITFFCMATGFPRPEITW---LKDGIELYHHKFFQVHEWPVGNDTLKSKMEIDPATQ 92

Query: 268 --LGEYACQAYN 297
              G Y CQA N
Sbjct: 93  KDAGYYECQADN 104


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 24.6 bits (51), Expect = 0.62
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -1

Query: 179 PLYQKISGVGYPYTRQRKTSGLPISPVITS-FCSPAMPTGV 60
           P + K++  G  YT Q   SG+ +SP+  + + SP   T +
Sbjct: 235 PKFTKMTIDGESYTAQDGISGMALSPMTNNLYYSPVASTSL 275


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 24.6 bits (51), Expect = 0.62
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -1

Query: 179 PLYQKISGVGYPYTRQRKTSGLPISPVITS-FCSPAMPTGV 60
           P + K++  G  YT Q   SG+ +SP+  + + SP   T +
Sbjct: 235 PKFTKMTIDGESYTAQDGISGMALSPMTNNLYYSPVASTSL 275


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 24.6 bits (51), Expect = 0.62
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -1

Query: 179 PLYQKISGVGYPYTRQRKTSGLPISPVITS-FCSPAMPTGV 60
           P + K++  G  YT Q   SG+ +SP+  + + SP   T +
Sbjct: 235 PKFTKMTIDGESYTAQDGISGMALSPMTNNLYYSPVASTSL 275


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 24.2 bits (50), Expect = 0.82
 Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -1

Query: 179 PLYQKISGVGYPYTRQRKTSGLPISPVITS-FCSPAMPTGV 60
           P Y K++  G  +T +    G+ +SPV  + + SP +  G+
Sbjct: 238 PRYTKLTVAGESFTVKNGIYGIALSPVTNNLYYSPLLSHGL 278


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +1

Query: 97  ITGEMGRPLVLRCLVYGYPTPEIFWYR 177
           I+  +G  + ++C V G P P + W R
Sbjct: 320 ISARVGDNVEIKCDVTGTPPPPLVWRR 346



 Score = 23.4 bits (48), Expect = 1.4
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
 Frame = +1

Query: 127 LRCLVYGYPTPEIFWYRGLNGPMVPYSSTLYEAREN-VLLIRQLIDEA-LGEYACQA 291
           +RC V G P P + W +  +  +       Y+   N   LI + +D A  G Y CQA
Sbjct: 421 IRCHVAGEPLPRVQWLKN-DEALNHDQPDKYDLIGNGTKLIIKNVDYADTGAYMCQA 476


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = +1

Query: 193 MVPYSSTLYEARENVLLIRQLIDEALGEYACQAYNGEG 306
           M P+   ++  R   LL+ ++ D+ L + A    +G G
Sbjct: 332 MAPWVRKIFIRRLPKLLLMRVPDDLLNDLAAHKMHGRG 369


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 6/10 (60%), Positives = 6/10 (60%)
 Frame = +3

Query: 447 HRHYHCCPHH 476
           H H H  PHH
Sbjct: 423 HSHIHATPHH 432


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -1

Query: 179 PLYQKISGVGYPYTRQRKTSGLPISPVITS-FCSPAMPTGV 60
           P Y K++  G  +T +    G+ +SPV  + + SP    G+
Sbjct: 233 PRYAKMTIDGESFTLKNGICGMALSPVTNNLYYSPLASHGL 273


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = -1

Query: 179 PLYQKISGVGYPYTRQRKTSGLPISPVITS-FCSP 78
           P Y K+   G  +T Q    G+ +SP+  + + SP
Sbjct: 236 PKYIKMMDAGESFTAQDGIFGMALSPMTNNLYYSP 270


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 11/40 (27%), Positives = 17/40 (42%)
 Frame = -1

Query: 140 TRQRKTSGLPISPVITSFCSPAMPTGVLTGSCPLAQASSS 21
           T  +    +PI P+I  +C P       T   P+ +  SS
Sbjct: 777 TNSQAIPRIPILPMIPVYCVPVPQVNDSTILSPVREKLSS 816


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,184
Number of Sequences: 438
Number of extensions: 3376
Number of successful extensions: 36
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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