Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS325C08f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces... 50 3e-07
SPAC6B12.12 |tom70||mitochondrial TOM complex subunit Tom70|Schi... 49 5e-07
SPBC32H8.06 |mug93||TPR repeat protein, meiotically spliced|Schi... 37 0.002
SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch... 34 0.011
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac... 29 0.32
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces... 28 0.97
SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc... 27 1.3
SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein |Sch... 26 3.0
SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc... 26 3.0
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 25 6.8
SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex ... 25 6.8
SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyce... 25 9.0
>SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 591
Score = 49.6 bits (113), Expect = 3e-07
Identities = 30/107 (28%), Positives = 49/107 (45%), Gaps = 1/107 (0%)
Frame = +3
Query: 96 FSEQKYDEAINLYTAAIQLNPQSALLFAKRGQVYLKLNKPNACIKDCTHALELNCDSAAA 275
F + AI YT + P F R YLK+ P CI+DC A+EL+ + A A
Sbjct: 410 FKSGDFANAIKEYTEMTKRAPSDPRGFGNRAAAYLKVMAPAECIRDCNKAIELDPNFAKA 469
Query: 276 YKFRGRAYRLLGKFEESSHDLCESLKID-YDDQTNEWLNEVKPNAEK 413
Y + +A +L + + E+ ++D + T + L E++ K
Sbjct: 470 YVRKAQALFMLKDYNKCIDACNEASEVDRREPNTGKNLREIESQLSK 516
>SPAC6B12.12 |tom70||mitochondrial TOM complex subunit
Tom70|Schizosaccharomyces pombe|chr 1|||Manual
Length = 625
Score = 48.8 bits (111), Expect = 5e-07
Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Frame = +3
Query: 90 RAFSEQKYDEAINLYTAAIQLNPQSALLFAKRGQVYLKLNKPNACIKDCTHALELNCDSA 269
+A+ +++Y AI+ YT AI + + F+ R Y + IKD + AL L+
Sbjct: 160 KAYGQKEYANAIDYYTQAITCS-HDPIFFSNRAACYAAIGDFEQVIKDTSEALSLDSSYV 218
Query: 270 AAYKFRGRAYRLLGKFEESSHDLCESLKIDYDDQTNEWLN-EVKPNAEKLRQHKLSA 437
A R AY LGK +E+ D ++ +D NE + V+ +K+ + K SA
Sbjct: 219 KALNRRSAAYEQLGKLDEALMD--STVSCIFDGFANESMTATVERLLKKVAEKKSSA 273
>SPBC32H8.06 |mug93||TPR repeat protein, meiotically
spliced|Schizosaccharomyces pombe|chr 2|||Manual
Length = 383
Score = 37.1 bits (82), Expect = 0.002
Identities = 16/52 (30%), Positives = 30/52 (57%)
Frame = +3
Query: 102 EQKYDEAINLYTAAIQLNPQSALLFAKRGQVYLKLNKPNACIKDCTHALELN 257
++ Y + ++ T A+ +NP + +RG YL+L P+ +D H+LEL+
Sbjct: 54 KKSYTKVVHDCTYALVINPYDKKVIWRRGLAYLRLGHPHLANRDWEHSLELD 105
>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 476
Score = 34.3 bits (75), Expect = 0.011
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Frame = +3
Query: 96 FSEQKYDEAINLYTAAIQLNPQSAL--LFAKRGQVYLKLNKPNACIKDCTHALELNCDSA 269
+ E+KY EAI YT AI L SAL ++ R Y+++ + + D + + D
Sbjct: 34 YKEKKYAEAIKAYTEAIDLGSDSALAIYYSNRAATYMQIGEFELALCDAKQSDRIKPDVP 93
Query: 270 AAYKFRGRAYRLLGKFEES 326
+AY L E+
Sbjct: 94 KTQSRIRQAYEGLSILNEA 112
Score = 27.1 bits (57), Expect = 1.7
Identities = 19/68 (27%), Positives = 30/68 (44%)
Frame = +3
Query: 183 RGQVYLKLNKPNACIKDCTHALELNCDSAAAYKFRGRAYRLLGKFEESSHDLCESLKIDY 362
+ QVY+ N + K L LN + A RG+ G+ ++ E+LK+D
Sbjct: 149 KAQVYIFQNDMDRAQKIAHDVLRLNPKNVEALVLRGKVMYYSGENAKAITHFQEALKLDP 208
Query: 363 DDQTNEWL 386
D T + L
Sbjct: 209 DCTTAKTL 216
>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
Hip3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1630
Score = 29.5 bits (63), Expect = 0.32
Identities = 17/61 (27%), Positives = 26/61 (42%)
Frame = -2
Query: 274 AAALSQFNSKACVQSLIHAFGLFSFRYTCPRLANNKALCGFNCMAAVYRLIASSYFCSEN 95
A +SQF K + IH + L Y+ N LC F + + + SS F ++
Sbjct: 713 AKFISQFLEKTSTEFQIHLWYLLYQAYSSAHRPYNSLLCAFQSLKIILIRLCSSSFSIQD 772
Query: 94 A 92
A
Sbjct: 773 A 773
>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 720
Score = 27.9 bits (59), Expect = 0.97
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +3
Query: 222 CIKDCTHALELNCDSAAAYKFRGRAYRLLG-KFEESSHDLCESLKIDYDDQTNEW 383
C ++ ++L D+A Y F + YRL FE SH ESL TN W
Sbjct: 348 CTQETVYSLLTGNDTACVYPFPNKPYRLPDVDFEIFSHCSFESL-TTVTTNTNIW 401
>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1062
Score = 27.5 bits (58), Expect = 1.3
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Frame = +1
Query: 310 VNLKNLPTIFVNP*RLTMMIKQMSGLMKLN-QMLKNYVNTN*VPNVKKRRKSIERN 474
+N+KN T+ V +L+ M+K ++K+ +LKN + PN+ K R S + N
Sbjct: 27 LNIKNGETVAVKKVKLSKMLKSDLSVIKMEIDLLKNLDH----PNIVKYRGSYQTN 78
>SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 459
Score = 26.2 bits (55), Expect = 3.0
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +3
Query: 261 DSAAAYKFRGRAYRLLGKFEES-SHDLCESLKID 359
+S YKF ++L G EES + LC+SL D
Sbjct: 190 ESKPFYKFLEEVFQLSGAIEESIIYGLCQSLSKD 223
>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
polymerase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1120
Score = 26.2 bits (55), Expect = 3.0
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +3
Query: 282 FRGRAYRLLGKFEESSHDLCESL 350
FRGRAY L S+D+C L
Sbjct: 668 FRGRAYPLSSHLHHVSNDVCRGL 690
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 25.0 bits (52), Expect = 6.8
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = +1
Query: 286 EGEHIGSWVNLKNLPTIFVNP 348
+ E +G+W N++ LP +NP
Sbjct: 581 KSELLGNWTNIEYLPNSGINP 601
>SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex
subunit Apc3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 665
Score = 25.0 bits (52), Expect = 6.8
Identities = 20/88 (22%), Positives = 40/88 (45%)
Frame = +3
Query: 114 DEAINLYTAAIQLNPQSALLFAKRGQVYLKLNKPNACIKDCTHALELNCDSAAAYKFRGR 293
D+A + A ++NP +++L G +Y + + A +L+ S+ A + +
Sbjct: 516 DQADFHFQRAAEINPNNSVLITCIGMIYERCKDYKKALDFYDRACKLDEKSSLARFKKAK 575
Query: 294 AYRLLGKFEESSHDLCESLKIDYDDQTN 377
LL +++ +L E LK D+ N
Sbjct: 576 VLILLHDHDKALVEL-EQLKAIAPDEAN 602
Score = 24.6 bits (51), Expect = 9.0
Identities = 16/87 (18%), Positives = 39/87 (44%)
Frame = +3
Query: 99 SEQKYDEAINLYTAAIQLNPQSALLFAKRGQVYLKLNKPNACIKDCTHALELNCDSAAAY 278
+ ++Y+++ + AI++N + + G VYLK + + A E+N +++
Sbjct: 477 ANEEYEKSKTSFRKAIRVNVRHYNAWYGLGMVYLKTGRNDQADFHFQRAAEINPNNSVLI 536
Query: 279 KFRGRAYRLLGKFEESSHDLCESLKID 359
G Y ++++ + K+D
Sbjct: 537 TCIGMIYERCKDYKKALDFYDRACKLD 563
>SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 406
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +3
Query: 138 AAIQLNPQSALLFAKRGQVYLKLNKPNACIKDCTHA 245
+A L+ QS +L A G + PNAC+ + H+
Sbjct: 63 SAEPLSRQSTILDADEGNQDVSDTTPNACLNEGRHS 98
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,961,497
Number of Sequences: 5004
Number of extensions: 38661
Number of successful extensions: 134
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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