Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS325C07f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC139.05 |||succinate-semialdehyde dehydrogenase |Schizosaccha...    76   3e-15
SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces pombe...    62   6e-11
SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|...    54   2e-08
SPCC550.10 |meu8||betaine aldehyde dehydrogenase |Schizosaccharo...    52   5e-08
SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb...    38   7e-04
SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces po...    32   0.060
SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7 |Schizos...    31   0.14 
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc...    25   5.2  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    25   6.8  
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    25   6.8  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    25   9.0  
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po...    25   9.0  
SPBC428.01c |nup107|SPBC582.11c|nucleoporin Nup107|Schizosacchar...    25   9.0  

>SPAC139.05 |||succinate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 493

 Score = 76.2 bits (179), Expect = 3e-15
 Identities = 34/96 (35%), Positives = 58/96 (60%)
 Frame = +3

Query: 123 YIDGQYVDSRTTNWIELTNPATNEVIGRVPEATQDELTSALDAAKRAYKTWSKSTVLTRQ 302
           ++ G+++ S      E+ NPAT E+IG+V + + +E   A+ AA  A+KT+   T + R 
Sbjct: 21  FVQGKWISSPNNKTFEVDNPATGEIIGKVADVSVEETKKAISAANEAFKTYKNFTHVQRS 80

Query: 303 QLMFKFARLLRENQSKLAAKITEEQGKTIADAEGDV 410
           QL+ ++A L+ EN+  L   +T E GK ++ AE +V
Sbjct: 81  QLLERWAELIMENKDDLVKMLTLENGKPLSQAEMEV 116


>SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 496

 Score = 61.7 bits (143), Expect = 6e-11
 Identities = 38/108 (35%), Positives = 60/108 (55%), Gaps = 1/108 (0%)
 Frame = +3

Query: 120 LYIDGQYVDSRTTNWIELTNPATNEVIGRVPEATQDELTSALDAAKRAYKTWSKSTVLTR 299
           LYI+G++  S  T W E  +P+  EVI +V  A + E+  A+ +AK A+KTW K     +
Sbjct: 23  LYINGEWHKSAET-W-ETVDPSIEEVIAKVYLAGEKEIDYAVKSAKEAFKTWKKVPGSEK 80

Query: 300 QQLMFKFARLLRENQSKLAAKITEEQGK-TIADAEGDVLRGIQSVEHC 440
            +L+ K A L  ++   LAA    + GK  +++A GDV   I  + +C
Sbjct: 81  GELLMKLAELTEKHADTLAAIEAMDSGKPLVSNARGDVDGTIALLRYC 128


>SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 503

 Score = 53.6 bits (123), Expect = 2e-08
 Identities = 30/100 (30%), Positives = 58/100 (58%), Gaps = 3/100 (3%)
 Frame = +3

Query: 120 LYIDGQYVDSRTTNWIELTNPATNEVIGRVPEATQDELTSALDAAKRAYKT---WSKSTV 290
           L+I+ Q+VDS     +++ +P+T ++I  V +A ++++  A+  A+ A++T   W K + 
Sbjct: 25  LFINNQHVDSVHGGRVKVYSPSTEKLICEVADADEEDVDIAVKVARAAFQTDAPWRKFSS 84

Query: 291 LTRQQLMFKFARLLRENQSKLAAKITEEQGKTIADAEGDV 410
             R + + + A  + +N   LA+  T + GK+I  A GDV
Sbjct: 85  AQRGRCLSRLADCIEQNLEYLASIETLDNGKSITLARGDV 124


>SPCC550.10 |meu8||betaine aldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 500

 Score = 52.0 bits (119), Expect = 5e-08
 Identities = 34/106 (32%), Positives = 54/106 (50%), Gaps = 4/106 (3%)
 Frame = +3

Query: 105 APTTKLYIDGQYVD--SRTTNWIELTNPATNEVIGRVPEATQDELTSALDAAKRAYKT-- 272
           AP   L+IDG++V         I L NPAT E+IG    A+  ++ SA++ A   +++  
Sbjct: 18  APENSLFIDGKFVSPIEPAAKPIPLINPATEEIIGTCANASAKDVDSAVENAYNTFRSGI 77

Query: 273 WSKSTVLTRQQLMFKFARLLRENQSKLAAKITEEQGKTIADAEGDV 410
           W+K     R  ++ K A+++RE +  LA   T   GK    A  D+
Sbjct: 78  WAKWPGKQRGLVLRKIAKMMREKRELLAGIDTINCGKPTPYALFDI 123


>SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 38.3 bits (85), Expect = 7e-04
 Identities = 19/85 (22%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
 Frame = +3

Query: 180 PATNEVIGRVPEATQDELTSALDAAKRAYKTWSKSTVLTRQQLMFKFARLLRENQSKLAA 359
           P    ++G V    + ++  ++  A+ A K W  ++   R+  +      +  NQ K A 
Sbjct: 10  PGDGSLLGEVKLFNKSDIDQSIILAEEAQKEWKSTSFAERRNFLKALKENIIRNQDKYAE 69

Query: 360 KITEEQGKTIADAE-GDVLRGIQSV 431
              ++ GKT+ DA  G++L  ++ +
Sbjct: 70  IACKDTGKTLVDAAFGEILVTLEKI 94


>SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 296

 Score = 31.9 bits (69), Expect = 0.060
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
 Frame = +3

Query: 174 TNPATNEVIG---RVPEATQDELTSALDAAKRAYKTWSKSTVLTR 299
           T+  TNE++    ++ E  +D L  +L A+K  YK WS+   L R
Sbjct: 5   TDMETNEILDQLDKIDERNEDILLKSLKASKCTYKPWSREEFLRR 49


>SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 721

 Score = 30.7 bits (66), Expect = 0.14
 Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = +3

Query: 138 YVDSRTTNWIELTNPATNEVIGRV-PEATQDELTSALDAAKRAY 266
           Y  +RT  W+EL NPA  EV G +  E +  E T+++  A RA+
Sbjct: 498 YEPARTGEWMELLNPA--EVFGNIMVEYSYPECTTSVILALRAF 539


>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1190

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -3

Query: 246 PRRKSIHPELPLAP 205
           PR++ + PELPLAP
Sbjct: 760 PRKRRVLPELPLAP 773


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 7/20 (35%), Positives = 16/20 (80%)
 Frame = -2

Query: 166  IQLVVLESTYCPSIYSFVVG 107
            I++V+++ TY  ++Y +V+G
Sbjct: 1206 IEVVIIDQTYFINVYKYVIG 1225


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +3

Query: 60   KSESQLVLRRSYSSSAPTTKLYIDGQYVDSRTTNWI 167
            KS    +LR++Y    P+  +YIDG  + +  TNW+
Sbjct: 1141 KSTLVELLRKTY----PSEDIYIDGYPLTNIDTNWL 1172


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 78  VLRRSYSSSAPTTKLYIDGQYVD 146
           ++ R+  SS P  +LYIDG  V+
Sbjct: 480 LVHRNEKSSLPNLELYIDGSAVE 502


>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
 Frame = +3

Query: 54  LLKSESQLVLRRSYSSSAPTTKLYID---GQYVDSRTTNWIELTNPATNEVIGRVPEATQ 224
           LLK+  +L++R  + +  P     +     +YV S   N  +  NP+++EV+  V +  +
Sbjct: 30  LLKNFDKLLVRTGHYTPIPCGNNPLKRPIAEYVSSGVINLDKPANPSSHEVVAWVKKILR 89

Query: 225 DELT 236
            E T
Sbjct: 90  VEKT 93


>SPBC428.01c |nup107|SPBC582.11c|nucleoporin
           Nup107|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 794

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +3

Query: 237 SALDAAKRAYKTWSKSTVLTRQQLMFKFARLLREN 341
           SA+  A  +YK W K      ++ +  F  LL+ N
Sbjct: 663 SAVTKASTSYKVWKKKLNFASRKCVKSFTDLLQAN 697


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,026,050
Number of Sequences: 5004
Number of extensions: 38557
Number of successful extensions: 98
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)