Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS325C06f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    28   0.97 
SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase Exg2|Schizosacch...    26   3.9  
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual    25   5.2  
SPCC126.05c |mrpl17||mitochondrial ribosomal protein subunit L17...    25   6.8  
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    25   9.0  
SPAC26F1.14c |aif1|SPAC29A4.01c|apoptosis-inducing factor homolo...    25   9.0  
SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit...    25   9.0  

>SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 689

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -2

Query: 337 TKLWQISSIIINPLVYYDSSIIFTSTEENKIL 242
           +K W  +S++++PL +  S I+F      KI+
Sbjct: 215 SKCWAFTSLLVDPLHFMFSQIVFEDLSGKKIM 246


>SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase
           Exg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +1

Query: 379 SMDSKALSSAITKFSAKFCNELDKKKNVVS 468
           S DSK+L   +  F++K C E+DKK  +++
Sbjct: 10  SCDSKSLG--VDDFTSKRCREIDKKALLIT 37


>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 973

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -1

Query: 248 NSITTGTIEVVVPT 207
           N  T+GT+EVV+PT
Sbjct: 218 NGTTSGTVEVVIPT 231



 Score = 25.4 bits (53), Expect = 5.2
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -1

Query: 248 NSITTGTIEVVVPT 207
           N  T+GT+EVV+PT
Sbjct: 253 NGTTSGTVEVVIPT 266



 Score = 25.4 bits (53), Expect = 5.2
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -1

Query: 248 NSITTGTIEVVVPT 207
           N  T+GT+EVV+PT
Sbjct: 393 NGTTSGTVEVVIPT 406


>SPCC126.05c |mrpl17||mitochondrial ribosomal protein subunit
           L17|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 268

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +1

Query: 361 IKNPVLSMDSKALSSAITKFSAKFCNELDKKKNVVSSPLSAEY 489
           I++P+L+        +I K++A+  NEL       S PL AE+
Sbjct: 48  IRSPILTRQPSEFEKSIYKYNAELWNEL-------SDPLPAEF 83


>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1283

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 21/69 (30%), Positives = 30/69 (43%)
 Frame = -1

Query: 413 VIAEDKAFESILRTGFFISNSVNSINKTLANIIDNN*SFSLL*FINYFHFN*GK*NSITT 234
           +++  KAF S        S +V  +  T   I +   S S   F + F  N       T+
Sbjct: 672 IVSGSKAFTSTFPANGTTSGTVEVVEPTAGTITETIVSGSKT-FTSTFPAN-----GTTS 725

Query: 233 GTIEVVVPT 207
           GT+EVV PT
Sbjct: 726 GTVEVVEPT 734


>SPAC26F1.14c |aif1|SPAC29A4.01c|apoptosis-inducing factor homolog
           Aif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 575

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -2

Query: 301 PLVYYDSSIIFTSTEENKILSPPVPSKS*YLL 206
           P   Y   I+ T  E NK+  P + SK+ YLL
Sbjct: 251 PTESYTKLILATGGEPNKLPIPGLDSKNVYLL 282


>SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit
           Prp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 542

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 339 NTIYTIGNKEPCSQYGFKGFILCNHQVL 422
           NTI T  N++  + +  KG  L  HQ+L
Sbjct: 117 NTILTPENRKRTASFSTKGVSLSQHQLL 144


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,022,837
Number of Sequences: 5004
Number of extensions: 38249
Number of successful extensions: 124
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)