Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS325C06f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77136-5|CAB00882.1| 1152|Caenorhabditis elegans Hypothetical pr...    30   0.87 
AC024859-4|AAK29983.4|  472|Caenorhabditis elegans Hypothetical ...    29   2.7  
Z48045-9|CAA88099.4|  309|Caenorhabditis elegans Hypothetical pr...    27   6.2  
Z93386-5|CAB07646.1|  473|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z81537-2|CAB04373.1|  682|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>Z77136-5|CAB00882.1| 1152|Caenorhabditis elegans Hypothetical protein
            ZC376.6 protein.
          Length = 1152

 Score = 30.3 bits (65), Expect = 0.87
 Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
 Frame = +1

Query: 322  FARVLLILFTLLEIKNPVLSMD--SKALSSAITKFSAKFCNELDKKK 456
            F R L     ++ I+N + +M+   KA++SAI   +  +C ELD+K+
Sbjct: 883  FVRALNFFSKMVRIENRLKTMEIQHKAMASAIAHKNTLYCLELDRKE 929


>AC024859-4|AAK29983.4|  472|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.11 protein.
          Length = 472

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +3

Query: 312 IDDICQSFVNTIYTIGNKEPCSQYGFKGFILCNHQVLC 425
           I D+  S ++  Y +G  +PC  YG +G      ++ C
Sbjct: 184 ISDVTFSCISDNYWLGRNKPCLTYGLRGICYYFVEISC 221


>Z48045-9|CAA88099.4|  309|Caenorhabditis elegans Hypothetical
           protein C41C4.2 protein.
          Length = 309

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +1

Query: 289 NRLKD*LLSMIFARVLLILFTLLEIKNPVLSM 384
           NR++  LLSMIF  ++L++F L E    + +M
Sbjct: 14  NRIQ--LLSMIFCEIILLIFELFEFAAIIFNM 43


>Z93386-5|CAB07646.1|  473|Caenorhabditis elegans Hypothetical
           protein R11H6.1 protein.
          Length = 473

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 312 IDDICQSFVNTIYTIGNKEPCSQYGFKG 395
           +D +C   ++  Y +G K+PC  YG +G
Sbjct: 188 VDFVC---ISDSYWLGTKKPCLTYGLRG 212


>Z81537-2|CAB04373.1|  682|Caenorhabditis elegans Hypothetical
           protein F41D3.2 protein.
          Length = 682

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = -2

Query: 346 IVLTKL-WQISSIIINPLVYYDSSIIFTSTEENKILSPPVPS 224
           I+LT L + +SS II PLV   +  +  ++E N ILS  + S
Sbjct: 262 IILTFLPFTLSSSIIRPLVTIGTGCLMLTSEGNPILSNKILS 303


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,832,511
Number of Sequences: 27780
Number of extensions: 197626
Number of successful extensions: 456
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 456
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)