Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS325C04f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom...    40   2e-04
SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces po...    29   0.42 
SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|...    28   0.73 
SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2 alpha-1,...    26   3.9  
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    25   6.8  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    25   6.8  
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb...    25   9.0  

>SPAC926.04c |hsp90|swo1|heat shock protein
           Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 704

 Score = 39.9 bits (89), Expect = 2e-04
 Identities = 24/54 (44%), Positives = 33/54 (61%)
 Frame = -1

Query: 503 LMSPKSMLSRIYRMIKLGLGIDEDEPIQVEEPASGDVPPLEGDADDASRMEEVD 342
           L  P +   RI R+I LGL IDE+E   +EE ++  V   E +A+  S+MEEVD
Sbjct: 654 LDDPSAYAQRINRLISLGLSIDEEEEAPIEEISTESV-AAENNAE--SKMEEVD 704


>SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 262

 Score = 29.1 bits (62), Expect = 0.42
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 425 IQVEEPASGDVPPLEGDADDASRMEEVD 342
           IQ + P   D PP++ DAD+    EE D
Sbjct: 157 IQWDNPDFDDAPPVQPDADEEEEEEEAD 184


>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 699

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = +2

Query: 89  LIMCNTALRTFSKVAYITNSNKTKIQYCKYSGTIMTLL*KKSTENHFDYL 238
           L+  N   + FSK++ I+ S    I+YCK  G +        T +H D+L
Sbjct: 6   LVAINFEQQIFSKISEISESVGRAIRYCKEDGKVEGC----ETASHVDFL 51


>SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2
           alpha-1,3-glucosyltransferase Alg12 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 546

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -1

Query: 506 RLMSPKSMLSRIYRMIKLGLGIDED 432
           R++SP ++L+R YR  +L   ID+D
Sbjct: 513 RVVSPDTLLTRDYREDRLNFFIDKD 537


>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 843

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +3

Query: 117 HFQKLLTLRTVTKQRYNIVSILAQL*RYFKKNQQKIILIIY*NN 248
           HF  + T    T     + +++A + RY+ KNQ    LII  NN
Sbjct: 147 HFDSVSTGYGATDDGMGVATVMA-IARYYAKNQPNRDLIININN 189


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +3

Query: 339  LINFLHARCIISITLQWRHVSRSRLFNLNRLIFIN 443
            L++ LHAR  IS+   WR      L  + R +  N
Sbjct: 1098 LMHVLHARIFISVLHLWRSADDLHLPYITRALLTN 1132


>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 662

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -2

Query: 397 TCRHWRVMLMMHLAWR 350
           TC++W+ +L   L+WR
Sbjct: 57  TCKYWKKLLSDDLSWR 72


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,109,141
Number of Sequences: 5004
Number of extensions: 41461
Number of successful extensions: 92
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)