Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS325C04f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0546 - 18460309-18461859,18462593-18463015,18463415-18463540 53 1e-07
08_02_1151 - 24712200-24713750,24714587-24715009,24716076-24716201 53 1e-07
09_04_0550 - 18481095-18481496,18482623-18483898,18485769-18485821 51 6e-07
09_04_0548 - 18469636-18470037,18471164-18472705,18474052-184744... 51 6e-07
04_01_0042 + 473912-474058,474208-474349,474442-476264 49 2e-06
05_07_0128 + 27879969-27880143,27880232-27881323,27883562-278836... 30 1.3
01_01_0645 + 4890647-4890682,4891684-4891929,4892021-4892317,489... 30 1.3
11_06_0325 + 22376195-22377001,22377136-22377525,22377638-223777... 29 2.3
08_02_0600 - 19166283-19166851,19166988-19168839,19169347-191694... 29 3.0
05_01_0300 + 2340251-2340791,2340892-2341325 29 3.0
03_02_0004 - 4869853-4871106 28 4.0
01_06_0747 - 31645136-31646521,31647870-31648142,31649080-316491... 28 4.0
12_01_0357 + 2720860-2721066,2721169-2721384,2721481-2723608,272... 28 5.2
07_03_1265 + 25304408-25304545,25304895-25305032,25305746-253058... 28 5.2
05_07_0035 - 27221338-27221433,27221510-27221599,27222056-272221... 28 5.2
12_01_0179 - 1319291-1319332,1319884-1320579,1322759-1323207,132... 27 6.9
11_01_0179 - 1412391-1412863,1412947-1413412,1413504-1414551,141... 27 6.9
05_06_0132 + 25893241-25893435,25894266-25894487,25894567-258948... 27 6.9
02_04_0486 - 23351960-23353093 27 6.9
02_04_0483 - 23305492-23306625 27 6.9
09_02_0540 + 10410372-10411331 27 9.1
08_01_0080 + 566509-566746,566904-567151,567347-567532,567639-56... 27 9.1
04_04_1695 + 35433975-35437040 27 9.1
02_04_0492 - 23424745-23425890 27 9.1
>09_04_0546 - 18460309-18461859,18462593-18463015,18463415-18463540
Length = 699
Score = 53.2 bits (122), Expect = 1e-07
Identities = 29/54 (53%), Positives = 37/54 (68%)
Frame = -1
Query: 503 LMSPKSMLSRIYRMIKLGLGIDEDEPIQVEEPASGDVPPLEGDADDASRMEEVD 342
L P + +RI+RM+KLGL IDEDE + A D+PPLE DA + S+MEEVD
Sbjct: 651 LEDPNTFGTRIHRMLKLGLSIDEDESAE----ADADMPPLEDDAGE-SKMEEVD 699
>08_02_1151 - 24712200-24713750,24714587-24715009,24716076-24716201
Length = 699
Score = 53.2 bits (122), Expect = 1e-07
Identities = 30/54 (55%), Positives = 37/54 (68%)
Frame = -1
Query: 503 LMSPKSMLSRIYRMIKLGLGIDEDEPIQVEEPASGDVPPLEGDADDASRMEEVD 342
L P + SRI+RM+KLGL IDEDE + A D+PPLE DA + S+MEEVD
Sbjct: 651 LDDPNTFGSRIHRMLKLGLSIDEDETAE----ADTDMPPLEDDAGE-SKMEEVD 699
>09_04_0550 - 18481095-18481496,18482623-18483898,18485769-18485821
Length = 576
Score = 50.8 bits (116), Expect = 6e-07
Identities = 28/53 (52%), Positives = 36/53 (67%)
Frame = -1
Query: 503 LMSPKSMLSRIYRMIKLGLGIDEDEPIQVEEPASGDVPPLEGDADDASRMEEV 345
L P + +RI+RM+KLGL IDEDE + A D+PPLE DA + S+MEEV
Sbjct: 397 LEDPNTFGTRIHRMLKLGLSIDEDESAE----ADADMPPLEDDAGE-SKMEEV 444
>09_04_0548 -
18469636-18470037,18471164-18472705,18474052-18474474,
18474874-18474999
Length = 830
Score = 50.8 bits (116), Expect = 6e-07
Identities = 28/53 (52%), Positives = 36/53 (67%)
Frame = -1
Query: 503 LMSPKSMLSRIYRMIKLGLGIDEDEPIQVEEPASGDVPPLEGDADDASRMEEV 345
L P + +RI+RM+KLGL IDEDE + A D+PPLE DA + S+MEEV
Sbjct: 651 LEDPNTFGTRIHRMLKLGLSIDEDESAE----ADADMPPLEDDAGE-SKMEEV 698
>04_01_0042 + 473912-474058,474208-474349,474442-476264
Length = 703
Score = 49.2 bits (112), Expect = 2e-06
Identities = 24/54 (44%), Positives = 36/54 (66%)
Frame = -1
Query: 503 LMSPKSMLSRIYRMIKLGLGIDEDEPIQVEEPASGDVPPLEGDADDASRMEEVD 342
L P + +RI+RM+KLGL ID+D+ ++ A D+P L+ A + S+MEEVD
Sbjct: 652 LDDPNTFAARIHRMLKLGLNIDDDDAAAADDDA--DMPALDDAAAEESKMEEVD 703
>05_07_0128 +
27879969-27880143,27880232-27881323,27883562-27883698,
27884179-27884409,27884707-27884730
Length = 552
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +2
Query: 344 QLPPCEMHHQHHPPMAARLQKQALQPESAHL 436
QLP C++++ HP AR + PES+ L
Sbjct: 222 QLPACQLYYHSHPTPLARDDQLITSPESSSL 252
>01_01_0645 +
4890647-4890682,4891684-4891929,4892021-4892317,
4892407-4892574,4892674-4892841,4892924-4893004,
4893105-4893171,4893657-4893751,4894027-4894099,
4894177-4894247,4894325-4894374,4895263-4895375,
4895461-4895513
Length = 505
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -1
Query: 467 RMIKLGLGIDEDEPIQVEEPASGDVPPLEGDADDAS 360
R++ G+D DE + + EP D+P + G A S
Sbjct: 256 RIVLAATGVDHDELVSIAEPLLSDMPGVTGPAKPKS 291
>11_06_0325 +
22376195-22377001,22377136-22377525,22377638-22377778,
22377888-22378067,22378268-22378447,22378536-22378637,
22378768-22378896,22379318-22379422,22379528-22379623
Length = 709
Score = 29.1 bits (62), Expect = 2.3
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +2
Query: 125 KVAYITNSNKTKIQYCKYSGTIMTLL*KKSTENHFD 232
KV +++ K ++ +CK+ T TLL NH D
Sbjct: 557 KVQFLSGGEKARLAFCKFLVTPSTLLILDEPTNHLD 592
>08_02_0600 -
19166283-19166851,19166988-19168839,19169347-19169415,
19171797-19171844,19173500-19173622
Length = 886
Score = 28.7 bits (61), Expect = 3.0
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = +3
Query: 369 ISITLQWRHVSRSRLFNL-NRLIFINTKTQFDHSIDTGKHGLG 494
+ +TL+ + + R++L +L +L FI T +FD S D HG G
Sbjct: 52 LRLTLESQKLPRTKLLSLIMKLPFIFTCQRFDKSTDQAHHGDG 94
>05_01_0300 + 2340251-2340791,2340892-2341325
Length = 324
Score = 28.7 bits (61), Expect = 3.0
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +2
Query: 356 CEMHHQHHPPMAARLQKQAL 415
CEM QHHP A RL K+ +
Sbjct: 28 CEMTRQHHPQCARRLPKRII 47
>03_02_0004 - 4869853-4871106
Length = 417
Score = 28.3 bits (60), Expect = 4.0
Identities = 18/57 (31%), Positives = 25/57 (43%)
Frame = +3
Query: 243 NNGIFELNQSLAVHRCTKTNHYDMVPTVKVEILINFLHARCIISITLQWRHVSRSRL 413
N G++ S +H T+ D+ V+IL A S TLQW H S + L
Sbjct: 184 NRGLYVQGYSPTIH---PTDASDLASHATVDILTTATEASPTASATLQWTHGSLNAL 237
>01_06_0747 -
31645136-31646521,31647870-31648142,31649080-31649148,
31649486-31649614
Length = 618
Score = 28.3 bits (60), Expect = 4.0
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 344 QLPPCEMHHQHHPPMAARLQKQALQPESAHLHQYQ 448
QLPP M Q HPP+ +++ Q P H +Q
Sbjct: 407 QLPPQAMQPQQHPPVQNQMRPQT-PPNYPHYQPHQ 440
>12_01_0357 +
2720860-2721066,2721169-2721384,2721481-2723608,
2723699-2724124,2724242-2724546,2724660-2724823,
2724899-2724980
Length = 1175
Score = 27.9 bits (59), Expect = 5.2
Identities = 11/37 (29%), Positives = 17/37 (45%)
Frame = +2
Query: 344 QLPPCEMHHQHHPPMAARLQKQALQPESAHLHQYQDP 454
Q P + Q HPP+ + Q Q +Q + +Q P
Sbjct: 330 QAPAAQSQSQQHPPLQSAAQTQIVQAQPQSQVSFQQP 366
Score = 27.9 bits (59), Expect = 5.2
Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Frame = +2
Query: 290 HKNKPL*HGSYS*SRDLNQLPPCEM--HHQHHPPMAARLQKQALQPESAHLHQYQDP 454
H P GS + Q P E+ H Q H P ++ Q QP+ HL Q Q P
Sbjct: 375 HTPVPTQLGSQPFAMPPTQATPSEVQPHVQPHIPQHHQVMAQQQQPQLQHLPQQQHP 431
>07_03_1265 +
25304408-25304545,25304895-25305032,25305746-25305807,
25306321-25306423,25306560-25306636,25306915-25306971,
25307202-25307323,25307551-25307667,25308188-25308273,
25308387-25308560,25308671-25308940
Length = 447
Score = 27.9 bits (59), Expect = 5.2
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +2
Query: 350 PPCEMHHQHHPPMAARLQKQ 409
PP +HH HHP +AA +Q
Sbjct: 26 PPPPLHHHHHPLLAAAPPQQ 45
>05_07_0035 -
27221338-27221433,27221510-27221599,27222056-27222115,
27222231-27222523,27222601-27222757,27222917-27223261,
27223890-27224020,27224119-27224596,27224817-27225563
Length = 798
Score = 27.9 bits (59), Expect = 5.2
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -1
Query: 497 SPKSMLSRI-YRMIKLGLGIDEDEPIQVEEPASGDVPP 387
SP S + RI +R+ LGL D+DEP A+ PP
Sbjct: 86 SPTSSIDRIVHRLRNLGLASDDDEP--TAAAATATAPP 121
>12_01_0179 -
1319291-1319332,1319884-1320579,1322759-1323207,
1323291-1324903,1324991-1325077,1326983-1327251
Length = 1051
Score = 27.5 bits (58), Expect = 6.9
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = -1
Query: 455 LGLGIDEDEPIQVEEPASGDVPPLEGDADDASRMEEV 345
L D+DE EE AS D LEG DD + ++V
Sbjct: 376 LNTSSDDDEDDLEEEDASTDENQLEGKIDDFANWKDV 412
>11_01_0179 - 1412391-1412863,1412947-1413412,1413504-1414551,
1414639-1414725,1416244-1416411,1416785-1416958,
1417662-1417720,1418132-1420154,1420549-1420647,
1420998-1421796,1422101-1422120,1422446-1422513
Length = 1827
Score = 27.5 bits (58), Expect = 6.9
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = -1
Query: 455 LGLGIDEDEPIQVEEPASGDVPPLEGDADDASRMEEV 345
L D+DE EE AS D LEG DD + ++V
Sbjct: 1423 LNTSSDDDEDDLEEEDASTDENQLEGKIDDFANWKDV 1459
>05_06_0132 +
25893241-25893435,25894266-25894487,25894567-25894863,
25894944-25895111,25895201-25895368,25895456-25895536,
25895704-25895770,25895874-25895971,25896587-25896659,
25896753-25896823,25896919-25896968,25897698-25897810,
25898182-25898300,25898629-25898721,25899025-25899051,
25899422-25899823,25900467-25900513,25900612-25900651,
25900733-25900795,25900881-25901018,25901873-25902031,
25902111-25902164,25902324-25902392,25902514-25902643,
25902909-25902949,25903133-25903178,25903200-25903357,
25903560-25903605,25903702-25903853,25904022-25904243
Length = 1202
Score = 27.5 bits (58), Expect = 6.9
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -1
Query: 467 RMIKLGLGIDEDEPIQVEEPASGDVPPLE 381
RM+ GI+ DE + V EP D+P ++
Sbjct: 301 RMVLAASGIEHDELVSVAEPLLSDLPSVK 329
>02_04_0486 - 23351960-23353093
Length = 377
Score = 27.5 bits (58), Expect = 6.9
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Frame = -2
Query: 451 VLVLMKMSRFRLKSLLLETCRHWR-VMLMMHLAWRKLIKISTLTVGTMS*WFV--FVHRC 281
VLVL ++ S L TCRHWR + + AW + +S +G + + + HRC
Sbjct: 23 VLVLDRLGWSTHPSFAL-TCRHWRSAVSPFYPAWITPLLLSAADIGVTNVRYYSPYYHRC 81
>02_04_0483 - 23305492-23306625
Length = 377
Score = 27.5 bits (58), Expect = 6.9
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Frame = -2
Query: 451 VLVLMKMSRFRLKSLLLETCRHWR-VMLMMHLAWRKLIKISTLTVGTMS*WFV--FVHRC 281
VLVL ++ S L TCRHWR + + AW + +S +G + + + HRC
Sbjct: 23 VLVLDRLGWSTHPSFAL-TCRHWRSAVSPFYPAWITPLLLSAADIGVTNVRYYSPYYHRC 81
>09_02_0540 + 10410372-10411331
Length = 319
Score = 27.1 bits (57), Expect = 9.1
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = -2
Query: 460 SNWVLVLMKMSRFRLKSLLLETCRHWR-VMLMMHLAWRKLIKISTLTVG 317
S+ + V+++ R+ TCRHWR + + AW + +ST VG
Sbjct: 11 SDVLAVILERLRWSSHPSFALTCRHWRSAVSPFYPAWITPLLLSTAHVG 59
>08_01_0080 +
566509-566746,566904-567151,567347-567532,567639-567734,
567836-567907,567990-568106,570531-571676
Length = 700
Score = 27.1 bits (57), Expect = 9.1
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -1
Query: 425 IQVEEPASGDVPPLEGDADDASRMEEVD 342
++ EPA+ P EG+ + ++EEVD
Sbjct: 30 LEEAEPAAAAAPAAEGEGEHKRKLEEVD 57
>04_04_1695 + 35433975-35437040
Length = 1021
Score = 27.1 bits (57), Expect = 9.1
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = +2
Query: 353 PCEMHHQHHPPMAARLQKQALQPESAHLH 439
P HHQH PP + ++ +P A H
Sbjct: 144 PAVHHHQHQPPQSVSAEQPDSRPPPAFPH 172
>02_04_0492 - 23424745-23425890
Length = 381
Score = 27.1 bits (57), Expect = 9.1
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Frame = -2
Query: 451 VLVLMKMSRFRLKSLLLETCRHWR-VMLMMHLAWRKLIKISTLTVGTMS*WFV--FVHRC 281
VLVL + TCRHWR + + AW + +S VG S + + H+C
Sbjct: 24 VLVLEYRLGWSTHPSFASTCRHWRSAVSPFYPAWITPLLLSAADVGVTSARYYSPYYHKC 83
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,903,345
Number of Sequences: 37544
Number of extensions: 247193
Number of successful extensions: 750
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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