Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS325B10f
(495 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U42845-1|AAA83599.1| 196|Caenorhabditis elegans Ribosomal prote... 268 2e-72
U64844-3|AAB18306.1| 196|Caenorhabditis elegans Ribosomal prote... 266 8e-72
AL161712-18|CAC70140.1| 448|Caenorhabditis elegans Hypothetical... 30 0.80
U88176-4|ABB51191.1| 427|Caenorhabditis elegans Hypothetical pr... 29 1.4
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr... 29 1.9
AF016685-7|AAG24151.1| 341|Caenorhabditis elegans Seven tm rece... 29 1.9
U29488-1|AAA68773.2| 338|Caenorhabditis elegans Serpentine rece... 28 4.3
Z81465-3|CAC42253.4| 800|Caenorhabditis elegans Hypothetical pr... 27 5.7
AF016685-8|AAG24150.1| 340|Caenorhabditis elegans Seven tm rece... 27 5.7
U80027-17|AAC48114.1| 90|Caenorhabditis elegans Hypothetical p... 27 7.5
U61946-8|AAC24392.1| 185|Caenorhabditis elegans Hypothetical pr... 27 7.5
AC024805-16|AAK39336.1| 448|Caenorhabditis elegans Hypothetical... 27 9.9
>U42845-1|AAA83599.1| 196|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 11.2 protein.
Length = 196
Score = 268 bits (656), Expect = 2e-72
Identities = 124/164 (75%), Positives = 144/164 (87%)
Frame = +1
Query: 4 KVPKDNSKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFG 183
++ + ++NVMR L I+KLCLNICVGESGDRLTRAAKVLEQLTGQ PVFSKARYTVR+FG
Sbjct: 9 EIREKKARNVMRELKIQKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRTFG 68
Query: 184 IRRNEKIAVHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDP 363
IRRNEKIAVHCTVRG KAEEILE+GLKV+EYEL ++NFS TGNFGFG+QEHIDLGIKYDP
Sbjct: 69 IRRNEKIAVHCTVRGPKAEEILEKGLKVKEYELYKENFSDTGNFGFGVQEHIDLGIKYDP 128
Query: 364 SIGIYGLDFYVVLGRPGFNVAHRRRKTGKVGFPPRLXKEDAMKW 495
SIGIYG+DFYVVL R G +A RRR G+VG R+ +E+++KW
Sbjct: 129 SIGIYGMDFYVVLDRAGRRIAKRRRAPGRVGPSHRVEREESIKW 172
>U64844-3|AAB18306.1| 196|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 11.1 protein.
Length = 196
Score = 266 bits (651), Expect = 8e-72
Identities = 123/164 (75%), Positives = 141/164 (85%)
Frame = +1
Query: 4 KVPKDNSKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFG 183
++ + +NVMR L I+KLCLNICVGESGDRLTRAAKVLEQLTGQ PVFSKARYTVR+FG
Sbjct: 9 EIREKKGRNVMRELKIQKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRTFG 68
Query: 184 IRRNEKIAVHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDP 363
IRRNEKIAVHCTVRG KAEEILE+GLKV+EYEL ++NFS TGNFGFG+QEHIDLGIKYDP
Sbjct: 69 IRRNEKIAVHCTVRGPKAEEILEKGLKVKEYELFKENFSDTGNFGFGVQEHIDLGIKYDP 128
Query: 364 SIGIYGLDFYVVLGRPGFNVAHRRRKTGKVGFPPRLXKEDAMKW 495
IGIYG+DFYVVL R G V+ RRR G++G R+ KE+ +KW
Sbjct: 129 GIGIYGMDFYVVLNRNGVRVSKRRRAPGRIGPSHRVDKEETIKW 172
>AL161712-18|CAC70140.1| 448|Caenorhabditis elegans Hypothetical
protein Y66D12A.23 protein.
Length = 448
Score = 30.3 bits (65), Expect = 0.80
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +1
Query: 217 TVRGAKAEEILERGLKVREY-ELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGI 375
++R AEE+ RG + Y E+RR TG FG G + + I + S+ +
Sbjct: 353 SLREQSAEELQRRGCGIDWYLEMRRRGQPPTGGFGIGFERMLQYLIFFRKSLNL 406
>U88176-4|ABB51191.1| 427|Caenorhabditis elegans Hypothetical
protein F18F11.3 protein.
Length = 427
Score = 29.5 bits (63), Expect = 1.4
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +1
Query: 358 DPSIGIYGLDFYVVLGRPGFNVAHRRRKTGKVGFPPRLXKE 480
DP GI G+ + V G F +A R+ +GK RL K+
Sbjct: 160 DPDTGISGISRFSVEGDSSFTLAKRKCSSGKCSTQLRLAKK 200
>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
C41A3.1 protein.
Length = 7829
Score = 29.1 bits (62), Expect = 1.9
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = -1
Query: 318 AKITRGGEVVTPQFIFSDFQTPLKDFFCFSSSDCTMDSNLFITTDT 181
AK+ + G ++ PQ FS+F+ + FF + T+ N I+ D+
Sbjct: 5666 AKMLQTG-IIPPQVNFSEFRDGMGQFFTVNGKKSTISQNSLISIDS 5710
>AF016685-7|AAG24151.1| 341|Caenorhabditis elegans Seven tm
receptor protein 86 protein.
Length = 341
Score = 29.1 bits (62), Expect = 1.9
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -1
Query: 279 FIFSDFQTPLKDFF-CFSSSDCTMDSNLFIT 190
++ DF+ +KDFF C SD T S +F T
Sbjct: 300 YVIKDFRIGVKDFFKCGKKSDNTSSSTIFTT 330
>U29488-1|AAA68773.2| 338|Caenorhabditis elegans Serpentine
receptor, class a (alpha)protein 31 protein.
Length = 338
Score = 27.9 bits (59), Expect = 4.3
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -1
Query: 234 FSSSDCTMDSNLFITTDTKRPHCIPSLGKYRLLS 133
F SS+C ++SNL+ T+ C SL RLLS
Sbjct: 97 FQSSECLIESNLYYYTNLFSSLCCISLFFDRLLS 130
>Z81465-3|CAC42253.4| 800|Caenorhabditis elegans Hypothetical
protein C09F9.3 protein.
Length = 800
Score = 27.5 bits (58), Expect = 5.7
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Frame = -1
Query: 225 SDCTMDSNLFITTDTKRPHCIPSLGK---YRLLSCELLQHL 112
S CT+D F D+K+ C+ S+ K Y +++ E+ H+
Sbjct: 205 SICTIDGQRFSLGDSKKNFCLQSVSKAFNYAIVASEIGSHV 245
>AF016685-8|AAG24150.1| 340|Caenorhabditis elegans Seven tm
receptor protein 85 protein.
Length = 340
Score = 27.5 bits (58), Expect = 5.7
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -1
Query: 279 FIFSDFQTPLKDFFCFSSSDCTMDSNLFITTDTKRPH 169
++ DF+T +K+FF + T S+ +TT K H
Sbjct: 300 YVIKDFRTAVKNFFKRGTKSGTSPSSAVLTTKKKAWH 336
>U80027-17|AAC48114.1| 90|Caenorhabditis elegans Hypothetical
protein T28A11.4 protein.
Length = 90
Score = 27.1 bits (57), Expect = 7.5
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = -3
Query: 211 GQQSFHYDGYQKTALYT*PWKIQAVVL*VAPTPWRHESACHRIHQ 77
G+Q+FH++G +K A WK V P+ ++ S+ +IHQ
Sbjct: 51 GEQTFHFNGPEKGAFLDSDWKE------VDPSNYQMGSSHQKIHQ 89
>U61946-8|AAC24392.1| 185|Caenorhabditis elegans Hypothetical
protein F47C12.7 protein.
Length = 185
Score = 27.1 bits (57), Expect = 7.5
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -1
Query: 267 DFQTPLKDFFCFSSSDCTMDSNLFITTDTK 178
DF T +F CF S DC+ D+ + T K
Sbjct: 61 DFPTFHYEFNCFLSHDCSTDNKWYCQTRAK 90
>AC024805-16|AAK39336.1| 448|Caenorhabditis elegans Hypothetical
protein Y51H7C.1 protein.
Length = 448
Score = 26.6 bits (56), Expect = 9.9
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = -2
Query: 194 LRRIPKDRTVYLALENTGCCPVSCSNTLAARVSLSPDSPTQMFK 63
LRRI + +++ N CC SCS T +++L+ TQ+F+
Sbjct: 289 LRRIQATVSCGVSIGNQ-CCHQSCSGTYQRQINLNYYILTQIFR 331
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,415,281
Number of Sequences: 27780
Number of extensions: 264771
Number of successful extensions: 717
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 935344784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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