Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS325B08f
         (483 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP35G2.02 |||DUF1000 family protein|Schizosaccharomyces pombe|...    85   7e-18
SPBC577.08c |txl1|trx3|thioredoxin-like I protein Txl1|Schizosac...    58   5e-10
SPBC8E4.03 |||agmatinase 2 |Schizosaccharomyces pombe|chr 2|||Ma...    29   0.37 
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa...    26   2.6  
SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces p...    26   2.6  
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    25   6.0  
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos...    25   7.9  

>SPBP35G2.02 |||DUF1000 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 207

 Score = 84.6 bits (200), Expect = 7e-18
 Identities = 51/155 (32%), Positives = 81/155 (52%), Gaps = 4/155 (2%)
 Frame = +1

Query: 1   DKRLDRSKFVESDADEELLFNIPFTGNIKLKGIKVASEDTDSHPSKLRLFKNRPNMTFDD 180
           D R D +  VESDAD++LLF +PF G   LK I V     ++ P    LF NR ++ FD 
Sbjct: 52  DLRYDDTDIVESDADDQLLFQVPFAGAATLKSILVRIFPNETAPHSFSLFPNRTDLDFDT 111

Query: 181 V-MIEPDQVFELQKDTDG--ILEYCPKIVTFSSVSHLTMHFPKNFGA-ETTKIYYIGLKG 348
           +  ++  + FE     +G  I E+  K   + ++ +L + F K+ G+ + T+I YIGL+G
Sbjct: 112 IGDVQATETFEFPLTFEGSHIFEFPVKTRLYQNLQNLNIFFTKSDGSDDPTQIAYIGLRG 171

Query: 349 EWTPSHRHGVTLCSYEVMPNLDDHKLKHLDSVART 453
            + P  +    +  YE  P   DH   + + V R+
Sbjct: 172 SFVP-FKGDPVVTIYEATPRPSDHPKVNQEEVFRS 205


>SPBC577.08c |txl1|trx3|thioredoxin-like I protein
           Txl1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 290

 Score = 58.4 bits (135), Expect = 5e-10
 Identities = 42/118 (35%), Positives = 62/118 (52%), Gaps = 7/118 (5%)
 Frame = +1

Query: 19  SKFVESDADEELLFNIPFTGNIKLKGIKV--ASEDTDSHPSKLRLFKNRP-NMTFDDV-M 186
           S F+ESD DE+L+  IPF   +K+  I +     +T S P  ++L+ N+P N++F+D   
Sbjct: 158 SSFLESDVDEQLMIYIPFLEVVKVHSIAITPVKGETSSAPKTIKLYINQPNNLSFEDAES 217

Query: 187 IEPDQVFE-LQKDTDGILEYCP-KIVTFSSVSHLTMHFPKNFG-AETTKIYYIGLKGE 351
             P QV E +  + D      P + V F  V+ L +    N G  ETTKI  + L GE
Sbjct: 218 FTPTQVIEDIVYEQDDQPTIIPLRFVKFQRVNSLVIFIYSNVGEEETTKISRLELFGE 275


>SPBC8E4.03 |||agmatinase 2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 413

 Score = 29.1 bits (62), Expect = 0.37
 Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
 Frame = +1

Query: 103 VASEDTDSHPSKLRLFKNRP--NMTFDDVMIEPDQVFELQKDTDGILEYCPKIVTFSSVS 276
           +AS DTDSH S   L K RP  N+ ++D  ++ D     + + D   +Y   I TF+ + 
Sbjct: 21  LASIDTDSHLSPKVLEKLRPTENLAYEDDSLDDDTWRSKRWEFD--YQY-SGISTFAHLP 77

Query: 277 HLTMHFPKNFGAETTKIYYIGLKGEWTPSHRHG 375
           H+     +   +E   I  IG+  +   SHR G
Sbjct: 78  HVRCLVEQ---SEDFDIAIIGVPFDTAVSHRPG 107


>SPAC19A8.08 |upf2||nonsense-mediated decay protein
           Upf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1049

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -3

Query: 358 VSILLLIQCNKFLLFLPQSSLE-SALLDVILKK 263
           V  LLL  C +FLL  P++ L+  + L+ I KK
Sbjct: 578 VLALLLESCGRFLLRYPETKLQMQSFLEAIQKK 610


>SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 598

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +1

Query: 283 TMHFPKNFGAETTKIYYIGLKGEWTPSHRHGVTLCSYEVMP 405
           T+  PK+ GA    +Y  GL  E     + G+  C YE  P
Sbjct: 43  TITGPKSQGASQAMLYATGLNEEDMKKPQVGIASCWYEGNP 83


>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1418

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 12/21 (57%), Positives = 15/21 (71%), Gaps = 2/21 (9%)
 Frame = -2

Query: 140 NFDGCESVSSDAT--FIPLSF 84
           NFDG E+ S DAT   IP+S+
Sbjct: 425 NFDGLENASYDATKPIIPVSY 445


>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
           Plc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 899

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +1

Query: 1   DKRLDRSKFVESDADEELLFNIPFTGNIKLKGIKVASEDTDSH 129
           D R  R ++  S  +E+  F I +  + KLK + + S   D+H
Sbjct: 219 DARNYREQYKISSENEKRWFTIIYCADNKLKAMHMISPTLDAH 261


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,969,112
Number of Sequences: 5004
Number of extensions: 39665
Number of successful extensions: 95
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)