Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS325B08f
(483 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0343 + 21155237-21155496,21155596-21155842,21155939-211560... 101 4e-22
03_06_0291 + 32882831-32882998,32883238-32883361,32884528-328845... 50 7e-07
08_02_0290 + 15383473-15383669,15385057-15385267,15386389-153864... 37 0.007
12_02_0142 - 14306325-14306490,14306584-14306687,14306788-143069... 29 1.5
06_03_0019 + 15506702-15506896,15507741-15507875,15508264-155085... 29 1.5
02_02_0549 + 11410129-11412180 28 3.4
07_01_0226 - 1654917-1656923,1658757-1658810,1659128-1660891 28 4.5
07_01_0224 - 1646114-1648396 28 4.5
06_03_0809 + 24814590-24816593 27 6.0
11_01_0274 - 2050667-2052115 27 7.9
07_01_0219 - 1627669-1629765 27 7.9
04_01_0408 - 5393354-5393659,5393974-5394219,5394442-5394583,539... 27 7.9
>01_05_0343 + 21155237-21155496,21155596-21155842,21155939-21156064,
21156291-21156428,21156513-21156650,21156756-21157013,
21157404-21157541,21158023-21158092,21158267-21158480,
21158614-21158719,21159844-21160077,21160836-21161000,
21161083-21161232,21161308-21161399,21161631-21161712,
21161800-21161883,21161980-21162096,21162179-21162289,
21162698-21162892,21164495-21164575,21165671-21165720,
21165978-21165990,21166518-21166600,21166693-21166833,
21166879-21166936,21167023-21167072,21167474-21167582,
21167666-21167727,21168321-21168363
Length = 1204
Score = 101 bits (241), Expect = 4e-22
Identities = 47/97 (48%), Positives = 65/97 (67%), Gaps = 1/97 (1%)
Frame = +1
Query: 142 RLFKNRPNMTFDDVM-IEPDQVFELQKDTDGILEYCPKIVTFSSVSHLTMHFPKNFGAET 318
R+F NR + F+D ++P Q +EL ++ G+LEY + F V++LT+HFP+NFG +T
Sbjct: 1097 RMFINREGIDFNDAQNMQPVQEWELAENLQGVLEYQTRYSRFQGVANLTLHFPENFGGDT 1156
Query: 319 TKIYYIGLKGEWTPSHRHGVTLCSYEVMPNLDDHKLK 429
TKIYYIGL+GE T + R V YE+MPN DHK K
Sbjct: 1157 TKIYYIGLRGEATQNKRDVVATIVYEIMPNPSDHKTK 1193
>03_06_0291 +
32882831-32882998,32883238-32883361,32884528-32884576,
32884672-32884732,32884871-32884917,32885005-32885082,
32885462-32885510
Length = 191
Score = 50.4 bits (115), Expect = 7e-07
Identities = 38/118 (32%), Positives = 58/118 (49%), Gaps = 4/118 (3%)
Frame = +1
Query: 7 RLDRSKFVESDADEELLFNIPFTGNIKLKGIKVASEDTDSHPSKLRLFKNRPNMTFDDVM 186
R D ++ SD+DE+LL +IPF +KL + D P ++LF N+ +M F +V
Sbjct: 59 RDDEGLYLASDSDEQLLIHIPFMQVVKLHSALFKGPEEDG-PKTIKLFCNKEHMGFSNVN 117
Query: 187 IEPDQVFELQKDTDGILEYCP---KIVTFSSVSHLTMHFPKN-FGAETTKIYYIGLKG 348
P L ++ + E P K V F +V LT+ N G++ +KI I L G
Sbjct: 118 DYPPS-DSLDLSSNHLSESKPMQLKYVKFQNVRSLTIFIEDNQSGSDVSKILKIALYG 174
>08_02_0290 +
15383473-15383669,15385057-15385267,15386389-15386440,
15386545-15386863,15387022-15387121,15387391-15387657,
15387780-15387857,15387943-15388032,15388119-15388168,
15388267-15388366,15388777-15388875,15389023-15389136,
15389238-15389412,15389726-15390132,15390565-15390639,
15391412-15391438
Length = 786
Score = 37.1 bits (82), Expect = 0.007
Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Frame = +1
Query: 1 DKRLDRSKFVESDADEELLFNIPFTGNIKLKGIKVASEDTDSHPSK-LRLFKNRPNMTFD 177
D+R DR VE+ DE +I G++K K + +++ T S + R +NRP+ T +
Sbjct: 168 DERKDRRSDVENSEDERRRLSI---GSLKKKALNASNKLTHSLKKRGKRKVENRPSFTIE 224
Query: 178 DVMIEPDQ--VFELQKD 222
DV E ++ VF Q++
Sbjct: 225 DVRDEEEERAVFSFQQE 241
>12_02_0142 -
14306325-14306490,14306584-14306687,14306788-14306967,
14307155-14307253,14307346-14307535,14307722-14307748,
14308190-14308506,14308532-14308675,14308799-14308905,
14309085-14309357,14309470-14309827
Length = 654
Score = 29.5 bits (63), Expect = 1.5
Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
Frame = +1
Query: 178 DVMIEPDQVFELQKDTDGILEYCPKIVTFSSVSHLTMHFPKNFGAETTKIY---YIGLKG 348
DV+ +P VFEL T+G L I+ LT P F +TTK+ GL
Sbjct: 2 DVLGQPCPVFELNGGTNGSLR--GFIIRSLPTCLLTKSVPFTFSCKTTKVVAEPSAGLTA 59
Query: 349 EWTPSHRHGVTLCS 390
++ H G L S
Sbjct: 60 DFLAIHSRGEELVS 73
>06_03_0019 +
15506702-15506896,15507741-15507875,15508264-15508501,
15508652-15508855,15508945-15509111
Length = 312
Score = 29.5 bits (63), Expect = 1.5
Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Frame = +1
Query: 124 SHPSKLRLFKNRPNMTFDDVMIEPDQVFELQKDTDGILEYCPKI--VTFSSVSHLTMHFP 297
SH + L++ + TFD V I D+V + +++ L I + H
Sbjct: 226 SHNELVSLWEKKVGKTFDRVYIPEDEVLKKIQESPAPLNVVLSINHSVWVKGDHTNFEIE 285
Query: 298 KNFGAETTKIY 330
+FG E T++Y
Sbjct: 286 PSFGVEATELY 296
>02_02_0549 + 11410129-11412180
Length = 683
Score = 28.3 bits (60), Expect = 3.4
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = +3
Query: 243 LSKDCYIFFSITSNNALSKELWGRNNKNLLHWIKR 347
L + + + N +L K L+G NN +L W +R
Sbjct: 425 LKNELLLVYDYMPNGSLDKYLYGHNNMPVLSWAQR 459
>07_01_0226 - 1654917-1656923,1658757-1658810,1659128-1660891
Length = 1274
Score = 27.9 bits (59), Expect = 4.5
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +3
Query: 261 IFFSITSNNALSKELWGRNNKNLLHWIKR 347
+ + SN +L K L+G+ N + L W +R
Sbjct: 1016 LVYDYMSNGSLDKHLYGQENNSTLTWAQR 1044
>07_01_0224 - 1646114-1648396
Length = 760
Score = 27.9 bits (59), Expect = 4.5
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +3
Query: 261 IFFSITSNNALSKELWGRNNKNLLHWIKR 347
+ + N +L K L+G +NK +L+W +R
Sbjct: 509 LVYDYMPNGSLDKYLYGEDNKPVLNWAQR 537
>06_03_0809 + 24814590-24816593
Length = 667
Score = 27.5 bits (58), Expect = 6.0
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +3
Query: 252 DCYIFFSITSNNALSKELWGRNNKNLLHWIKR 347
D Y+ F + N ALS + G N L W +R
Sbjct: 433 DTYLVFELAENGALSDWIRGDNGGRALSWRQR 464
>11_01_0274 - 2050667-2052115
Length = 482
Score = 27.1 bits (57), Expect = 7.9
Identities = 17/63 (26%), Positives = 29/63 (46%)
Frame = +1
Query: 100 KVASEDTDSHPSKLRLFKNRPNMTFDDVMIEPDQVFELQKDTDGILEYCPKIVTFSSVSH 279
++AS D S L + + F ++ PD+ + TDGI+ Y P F +S
Sbjct: 41 RLASIDASSVMCTLSIHASAHRRMFSSLIASPDE-----ETTDGIISYVPFSDGFDDISK 95
Query: 280 LTM 288
L++
Sbjct: 96 LSI 98
>07_01_0219 - 1627669-1629765
Length = 698
Score = 27.1 bits (57), Expect = 7.9
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 261 IFFSITSNNALSKELWGRNNKNLLHWIKR 347
+ + SN +L K L G++NK L W +R
Sbjct: 445 LVYEYMSNGSLDKYLHGQDNKPTLSWAQR 473
>04_01_0408 -
5393354-5393659,5393974-5394219,5394442-5394583,
5394981-5395076,5395153-5395265,5395345-5395559,
5395645-5395742,5395815-5395935,5396020-5396240,
5396625-5396805,5396906-5397188,5397346-5397395,
5398565-5398805
Length = 770
Score = 27.1 bits (57), Expect = 7.9
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Frame = +1
Query: 10 LDRSKFVESDADEELLFNIPFTGN----IKLKGIKVASEDTDSHPSKLRLFKNRPNMTFD 177
LD++ + S DEE++ ++P +++ G V+S+D SH ++ F N D
Sbjct: 361 LDKTYILWSQRDEEVMLDLPTCAMAFRLLRMNGYGVSSDDL-SHVAEASTFHNSVEGYLD 419
Query: 178 D 180
D
Sbjct: 420 D 420
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,433,665
Number of Sequences: 37544
Number of extensions: 210887
Number of successful extensions: 502
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 502
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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