Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS325B08f
         (483 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    22   4.0  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   5.2  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    21   9.1  

>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 265 SSVSHLTMHFPKNFGAETTKIYY 333
           SS+S+ T+H   N+     K+YY
Sbjct: 316 SSLSNKTIHNNNNYKNYNKKLYY 338


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -2

Query: 161  GLFLNNLNFDGCESVSSDATFIPLSFIFPVNGI 63
            G F+N    D  ESV S  T   L F++  N I
Sbjct: 911  GKFMNVNMLDTYESVHSFPTETGLPFVYTFNVI 943


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 7/25 (28%), Positives = 12/25 (48%)
 Frame = -2

Query: 320 VVSAPKFFGKCIVRCDTEENVTIFG 246
           V  A    GKC++ C   + + + G
Sbjct: 12  VTGANSGIGKCLIECLVGKGMKVIG 36


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,424
Number of Sequences: 438
Number of extensions: 2404
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13174803
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)