Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS325B03f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase Tpp1|Schi...    28   0.73 
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|...    26   3.0  
SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces pombe...    25   5.2  
SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|c...    25   6.8  
SPAC1834.01 |sup45||translation release factor eRF1|Schizosaccha...    25   6.8  

>SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase
           Tpp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
 Frame = -3

Query: 432 TTHYRANWVPGPPSRYNNIIIKTSYKYKHW----ENTITGLITY 313
           +T Y   W+PGP      II +T  +   W    EN I  LI Y
Sbjct: 131 STEYVPVWLPGPEKGSETIINETRSQQSRWLAYAENVIRPLIHY 174


>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 310

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = +2

Query: 5   ASICSYAATES*GCSTTFADTSRPLRVAKDFSKVNRPPPLWNVFIKQYK 151
           A++    AT +   S   A  +   R A+D ++  RPP  +N+F K  +
Sbjct: 84  AAVAPVEATSAVDTSEAVASMTPNKRKARDPAQPKRPPSAYNLFQKNQR 132


>SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +1

Query: 64  YFTTIESCKRLLKSKQTSATVERLHKTIQDCKQTLKKF 177
           Y+   +SC + L S+   A VER    + D     KKF
Sbjct: 365 YYYASDSCPKDLSSESQLAFVERCKLIVNDALILAKKF 402


>SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 547

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = -3

Query: 84  TLNGREVSANVVEHPHDSVAAYEQI 10
           T N R  S N+V H H  V  Y  I
Sbjct: 311 TPNARSCSLNIVFHKHKKVCTYYMI 335


>SPAC1834.01 |sup45||translation release factor
           eRF1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 433

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 16/60 (26%), Positives = 26/60 (43%)
 Frame = +1

Query: 271 TDYMCNNNFTIVAIVSN*TGDSIFPMFIFVGSFYYYVIISRGGARYPIRPIVSRITIHWP 450
           + Y+C+N F   A+      D  F   +  G    Y ++S G A    R ++ R T+  P
Sbjct: 120 SQYLCDNKFHTEALAELLESDQRFGFIVMDGHQTLYGVVS-GSA----REVLQRFTVDLP 174


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,162,135
Number of Sequences: 5004
Number of extensions: 41407
Number of successful extensions: 88
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)