Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS325B03f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1410 - 26876243-26876497,26877129-26877239,26877240-268773...    29   3.0  
12_02_1211 - 27033927-27034029,27034130-27034273,27034358-270344...    27   6.9  
05_03_0626 - 16335816-16335917,16336331-16336558,16336694-163369...    27   6.9  
05_03_0624 - 16319364-16320581                                         27   6.9  
05_03_0599 + 16026042-16027259                                         27   6.9  
06_03_1202 - 28366546-28366899,28367851-28367905,28368238-283682...    27   9.1  

>08_02_1410 -
           26876243-26876497,26877129-26877239,26877240-26877324,
           26877620-26877672,26878318-26878440,26878514-26878597,
           26878708-26878773,26879512-26879584,26879854-26879888,
           26879970-26880212
          Length = 375

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +1

Query: 58  CGYFTTIESCKRLLKSKQTSATVERLHKTIQDCKQTLKKFG 180
           C Y + + S    +   Q  A VER+ K I+ CK+TL   G
Sbjct: 157 CFYRSFMFSYLEHILETQDKAEVERILKKIEQCKKTLADLG 197


>12_02_1211 -
           27033927-27034029,27034130-27034273,27034358-27034439,
           27034536-27034690,27034865-27034945,27035397-27035458,
           27035966-27036034,27036807-27036867,27037560-27037816
          Length = 337

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = +2

Query: 2   AASICSYAATES*GCSTTFADTSRPLRVAKDFSKVNRPPPL 124
           ++SI + +++ S   STT A  S PLR A   S   R PPL
Sbjct: 21  SSSIPASSSSSSSSSSTTTAAASLPLRAAVPPSSGRRIPPL 61


>05_03_0626 -
           16335816-16335917,16336331-16336558,16336694-16336973,
           16337596-16338560
          Length = 524

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 44  CSTTFADTSRPLRVAKDFSKVNRPPPLWN 130
           CST  +  S P R A+   +  RPPP W+
Sbjct: 129 CSTPLSPYSPPFRPARLIVRWARPPPGWH 157


>05_03_0624 - 16319364-16320581
          Length = 405

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 44  CSTTFADTSRPLRVAKDFSKVNRPPPLW 127
           CST  + +S P R ++   +  RPPP W
Sbjct: 214 CSTPLSPSSPPFRPSRVIVRWARPPPGW 241


>05_03_0599 + 16026042-16027259
          Length = 405

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 44  CSTTFADTSRPLRVAKDFSKVNRPPPLW 127
           CST  + +S P R ++   +  RPPP W
Sbjct: 214 CSTPLSPSSPPFRPSRVIVRWARPPPGW 241


>06_03_1202 -
           28366546-28366899,28367851-28367905,28368238-28368275,
           28369222-28369375,28369455-28369692,28369845-28369962,
           28370258-28370439,28371582-28371664,28372689-28372741,
           28373256-28373684
          Length = 567

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 11/45 (24%), Positives = 22/45 (48%)
 Frame = +1

Query: 376 YVIISRGGARYPIRPIVSRITIHWPSFYNVVTGKTPGVTQLNRLA 510
           Y    RG  ++ I   + +  + WP   N++ G   G+  L++L+
Sbjct: 275 YEFADRGSLQHYIFDKMRKSLLDWPQRVNIIKGVAEGLVYLHKLS 319


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,105,334
Number of Sequences: 37544
Number of extensions: 264554
Number of successful extensions: 556
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 556
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)