Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS325B02f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0290 + 32878040-32880193,32881607-32881720                       30   0.98 
12_02_1219 + 27096477-27096590,27096704-27097078                       29   1.7  
03_05_0630 + 26260159-26260272,26260520-26260894                       29   2.3  
09_04_0736 - 19815427-19815642,19815782-19816903,19817006-198177...    29   3.0  

>03_06_0290 + 32878040-32880193,32881607-32881720
          Length = 755

 Score = 30.3 bits (65), Expect = 0.98
 Identities = 21/67 (31%), Positives = 33/67 (49%)
 Frame = -2

Query: 202 YIKKSCYLTAEVIFFM*LCKCTTTILNERSATKVHVPLLCRSRTSLNC*YNL*RTIKTNL 23
           + K+ C LT+E +  +    C   ++ E  A K+    +C   T  +C +    TI   L
Sbjct: 505 HCKRGCNLTSESLEMLIQESCMVGMIRE--AIKMRSLAVC---TGTSCTFTTYNTIFRAL 559

Query: 22  LHLKKKK 2
           LHLKK+K
Sbjct: 560 LHLKKEK 566


>12_02_1219 + 27096477-27096590,27096704-27097078
          Length = 162

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +3

Query: 354 GFESFS--YLLFDEYQRPNGMARDGRXITANAAQSR 455
           GF +FS    + D  +  NG   DGR IT N AQSR
Sbjct: 52  GFVTFSSEQAMRDAIEGMNGKELDGRNITVNEAQSR 87


>03_05_0630 + 26260159-26260272,26260520-26260894
          Length = 162

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +3

Query: 354 GFESFS--YLLFDEYQRPNGMARDGRXITANAAQSR 455
           GF +FS    + D  +  NG   DGR IT N AQSR
Sbjct: 52  GFVTFSSEQSMRDAIEGMNGKELDGRNITVNEAQSR 87


>09_04_0736 -
           19815427-19815642,19815782-19816903,19817006-19817707,
           19817808-19817855,19817959-19818201,19819035-19819391
          Length = 895

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = +1

Query: 355 VLKASHIC-SLMSTRGQMEWLGTGGX*LRMPPNRGYARR 468
           VL    +C     +RG+ EWL TG    R  P +GY  R
Sbjct: 183 VLGGQELCVDFQRSRGRAEWLETGSFNGRTGPAKGYGVR 221


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,187,923
Number of Sequences: 37544
Number of extensions: 211820
Number of successful extensions: 321
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 321
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)