Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS325A12f
         (486 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    24   0.99 
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   2.3  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   2.3  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   2.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   3.0  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    22   4.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   4.0  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   5.3  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   5.3  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   7.0  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    21   7.0  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         21   9.2  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    21   9.2  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    21   9.2  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.8 bits (49), Expect = 0.99
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = +1

Query: 73  FGRFLDNHLGEL 108
           FGR++DN LGEL
Sbjct: 622 FGRYVDNLLGEL 633


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -2

Query: 191 RTFCPDS*DAPSPSNLTPIT 132
           R FCPD    P  +N  P T
Sbjct: 283 RYFCPDGSKVPIDANTKPCT 302


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -2

Query: 191 RTFCPDS*DAPSPSNLTPIT 132
           R FCPD    P  +N  P T
Sbjct: 283 RYFCPDGSKVPIDANTKPCT 302


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -2

Query: 191 RTFCPDS*DAPSPSNLTPIT 132
           R FCPD    P  +N  P T
Sbjct: 283 RYFCPDGSKVPIDANTKPCT 302


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = -1

Query: 411  PPLEDNEMKSMYNTDSGVGDSADAVSRLRQVYATRKLSETFHQLTDV 271
            PPLE N + + YN  + V D  + ++  ++   T     T+ + TD+
Sbjct: 1236 PPLEPNGIITKYNLYTRVVDGREELNHGKR---TLPAKNTYFEATDL 1279


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = -1

Query: 411  PPLEDNEMKSMYNTDSGVGDSADAVSRLRQVYATRKLSETFHQLTDV 271
            PPLE N + + YN  + V D  + ++  ++   T     T+ + TD+
Sbjct: 1232 PPLEPNGIITKYNLYTRVVDGREELNHGKR---TLPAKNTYFEATDL 1275


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -3

Query: 289  PPAHRRDTAEGPGKKTFGLSTPEPRV 212
            PPA+   T   P ++    S+P+PR+
Sbjct: 1269 PPAYSCGTVSVPQQQQLPPSSPQPRL 1294


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 297 ETFHQLTDVTLQRDPE 250
           E+FH+LT  T   DP+
Sbjct: 222 ESFHRLTSNTFDYDPK 237


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 15/51 (29%), Positives = 19/51 (37%)
 Frame = -3

Query: 223 EPRVLQADPKGGLSARTHRTRQAHQT*PRLHDGPLDPRTTLRDGYREIDRM 71
           +P  L A PK           Q  Q  P      +DP++    GYR   RM
Sbjct: 511 QPLDLSAKPKNSQDNNISLLEQ--QKIPLRMTAGIDPKSIFNSGYRPKPRM 559


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 467 KRRPVNCNTTHYRANWVPGP 408
           K++P +C+T  YR   V  P
Sbjct: 565 KKQPSDCDTLEYRNGEVTTP 584


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = +2

Query: 65  KSHSVDFSITISESCS 112
           K + +DF I ++E C+
Sbjct: 519 KENEIDFKIEVTEDCN 534


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -1

Query: 285 QLTDVTLQRDPEKRHSASQLLNHAFFKQI 199
           +L+   L  +P   +SAS  L+HA +  +
Sbjct: 175 KLSQFDLVANPTANYSASTTLSHAEYSML 203


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -1

Query: 282 LTDVTLQRDPEKRHSASQLLNHAFFKQIRR 193
           L +  L  +P KR +AS+ L H +  Q  R
Sbjct: 146 LINQMLTVNPSKRITASEALKHPWICQRER 175


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -1

Query: 297 ETFHQLTDVTLQRDPE 250
           ++FH+LT  T   DP+
Sbjct: 221 DSFHRLTSNTFDYDPK 236


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -1

Query: 297 ETFHQLTDVTLQRDPE 250
           ++FH+LT  T   DP+
Sbjct: 221 DSFHRLTSNTFDYDPK 236


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -1

Query: 297 ETFHQLTDVTLQRDPE 250
           ++FH+LT  T   DP+
Sbjct: 221 DSFHRLTSNTFDYDPK 236


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,091
Number of Sequences: 438
Number of extensions: 2595
Number of successful extensions: 16
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13297932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)