Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS325A08f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42844-8|AAB53820.1|  400|Caenorhabditis elegans Hypothetical pr...    33   0.12 
AL034393-26|CAI59121.1|  936|Caenorhabditis elegans Hypothetical...    27   8.1  
AL034393-25|CAI59120.1|  797|Caenorhabditis elegans Hypothetical...    27   8.1  
AL034393-24|CAA22312.3|  833|Caenorhabditis elegans Hypothetical...    27   8.1  

>U42844-8|AAB53820.1|  400|Caenorhabditis elegans Hypothetical
           protein C08A9.8 protein.
          Length = 400

 Score = 33.1 bits (72), Expect = 0.12
 Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
 Frame = -3

Query: 282 GSQCKRKSIYENKNVKFK*IQLICYKLVYILFSIKLC---FLHSHGFLFSNHQEESL 121
           G+ CK    Y NK +K K ++L  Y   Y +FS K     FL+ H F F  H+ ESL
Sbjct: 86  GNNCKHFIQYPNKQIKTKLLKLKSYSNKYKMFSRKKIYRKFLNIHCFKF--HKFESL 140


>AL034393-26|CAI59121.1|  936|Caenorhabditis elegans Hypothetical
           protein Y18D10A.7c protein.
          Length = 936

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 18/60 (30%), Positives = 29/60 (48%)
 Frame = -3

Query: 222 QLICYKLVYILFSIKLCFLHSHGFLFSNHQEESLFSRLF*IYYKVIMSTLNLDPICICHV 43
           ++  YK V + F    CF + H  L +N   ++  + +F I Y +  ST   +PI I  V
Sbjct: 154 RIFTYKDVCLHFQND-CFSNPHAKLLANIYSKNHQNSMFNITYPIYRSTYATEPIDISKV 212


>AL034393-25|CAI59120.1|  797|Caenorhabditis elegans Hypothetical
           protein Y18D10A.7b protein.
          Length = 797

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 18/60 (30%), Positives = 29/60 (48%)
 Frame = -3

Query: 222 QLICYKLVYILFSIKLCFLHSHGFLFSNHQEESLFSRLF*IYYKVIMSTLNLDPICICHV 43
           ++  YK V + F    CF + H  L +N   ++  + +F I Y +  ST   +PI I  V
Sbjct: 138 RIFTYKDVCLHFQND-CFSNPHAKLLANIYSKNHQNSMFNITYPIYRSTYATEPIDISKV 196


>AL034393-24|CAA22312.3|  833|Caenorhabditis elegans Hypothetical
           protein Y18D10A.7a protein.
          Length = 833

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 18/60 (30%), Positives = 29/60 (48%)
 Frame = -3

Query: 222 QLICYKLVYILFSIKLCFLHSHGFLFSNHQEESLFSRLF*IYYKVIMSTLNLDPICICHV 43
           ++  YK V + F    CF + H  L +N   ++  + +F I Y +  ST   +PI I  V
Sbjct: 154 RIFTYKDVCLHFQND-CFSNPHAKLLANIYSKNHQNSMFNITYPIYRSTYATEPIDISKV 212


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,333,071
Number of Sequences: 27780
Number of extensions: 153378
Number of successful extensions: 316
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 316
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)