Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS325A07f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G2.09c |crs1|mug17|meiosis specific cyclin Crs1|Schizosacch...    27   2.2  
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    25   6.8  
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||...    25   6.8  
SPBC15C4.01c |oca3||TPR repeat protein Oca3|Schizosaccharomyces ...    25   9.0  

>SPBC2G2.09c |crs1|mug17|meiosis specific cyclin
           Crs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 229

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = -1

Query: 209 IATDKSGTTPIGPLSSTNLLNIRLIRSKQNRTLYLLQLGWFSLDHMCMELQIL 51
           I  +K G T I P      +  +  R +    LY   +G+ S+D +C+ + +L
Sbjct: 62  IEQEKKGLTKISPSILNQNIAYKEKRQQLFSVLYEETVGYVSMDTLCIAISLL 114


>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = -3

Query: 189 HDSYRATKLDESIKYSPYTIETKSNFVSITIRLVFARSHVH 67
           H S+     D  +K  P + E   +    T+R V  +SHVH
Sbjct: 657 HPSFHRNS-DSKLKLEPSSKEKSGSMFFNTLRTVKDKSHVH 696


>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 234

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = -3

Query: 411 HLSFFYDGHTLSQCYCGITDSIITRV 334
           H +  Y G  + +C+  +  +IITR+
Sbjct: 154 HETSSYTGSNVEECFLSVVSTIITRI 179


>SPBC15C4.01c |oca3||TPR repeat protein Oca3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 282

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = -1

Query: 182 PIGPLSSTNLLNIRLIRSKQNRTLYLLQLGWFSLDHMCMELQI 54
           P  P     L ++  + ++ N T Y     WFSL H C  ++I
Sbjct: 170 PFEPRLFARLGDLYFVLAQSNATNY-----WFSLKHYCRSVEI 207


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,045,744
Number of Sequences: 5004
Number of extensions: 39828
Number of successful extensions: 81
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)