Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS325A07f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0703 + 27398358-27398466,27398549-27398859,27399044-273991...    27   6.9  
02_03_0121 + 15468894-15468906,15469008-15469193,15474157-154746...    27   9.1  

>04_04_0703 +
           27398358-27398466,27398549-27398859,27399044-27399109,
           27399196-27399258,27399304-27399444,27399535-27399612,
           27399688-27399738,27399829-27399863,27399982-27400090,
           27400235-27400441
          Length = 389

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/21 (52%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
 Frame = -3

Query: 381 LSQCYCGIT-DSIITRVHGRR 322
           L +CYCG+T  ++I+R  GRR
Sbjct: 351 LRKCYCGLTAHNVISRFDGRR 371


>02_03_0121 + 15468894-15468906,15469008-15469193,15474157-15474650,
            15475090-15475521,15475597-15475821,15476065-15476346,
            15476432-15476704,15477680-15477805,15481010-15481288,
            15481313-15481588,15481670-15482113,15482200-15482397,
            15482574-15482732,15482832-15483085,15483164-15483316,
            15483395-15483683,15483769-15483807,15483913-15483951
          Length = 1386

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 14/55 (25%), Positives = 27/55 (49%)
 Frame = -1

Query: 236  DPNILYKLSIATDKSGTTPIGPLSSTNLLNIRLIRSKQNRTLYLLQLGWFSLDHM 72
            DP ++   ++  D+  TTP GP  + + L   +I S  +  L ++   W S  ++
Sbjct: 1231 DPQVVIVTNLQNDR--TTPCGPAETRSTLCAPIINSNAHWILLVITPKWSSCHYL 1283


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,557,531
Number of Sequences: 37544
Number of extensions: 229790
Number of successful extensions: 454
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 454
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)