Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS325A05f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL023856-2|CAA19567.1|  327|Caenorhabditis elegans Hypothetical ...    27   6.2  
AL132863-4|CAB60575.1|  410|Caenorhabditis elegans Hypothetical ...    27   8.1  

>AL023856-2|CAA19567.1|  327|Caenorhabditis elegans Hypothetical
           protein Y94A7B.5 protein.
          Length = 327

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
 Frame = -1

Query: 287 FFLIPIFSVQVFYNHVNVIFIR*NDSPELL---FXXLNHII 174
           F L+PI  + +F N   ++F+R NDS   L   F  +N+II
Sbjct: 102 FMLVPISIILMFENRYFILFVR-NDSWRYLRYPFLIINYII 141


>AL132863-4|CAB60575.1|  410|Caenorhabditis elegans Hypothetical
           protein Y37H2A.6 protein.
          Length = 410

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -2

Query: 136 IHVVYYFDTYYIGNVX*SLYFLEYNIHFSIYFDNTQL 26
           + +V  FD  Y G+   ++ +  YN+ F+I+F   +L
Sbjct: 345 VEIVRLFDPSYSGDSDGTIIYRAYNLVFNIHFSRHRL 381


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,430,910
Number of Sequences: 27780
Number of extensions: 163775
Number of successful extensions: 302
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 302
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)