Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS325A01f
         (325 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch...    27   0.70 
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    27   0.93 
SPCC338.07c |||NatA N-acetyltransferase complex subunit |Schizos...    25   3.7  
SPBC211.06 |gfh1||gamma tubulin complex subunit Gfh1|Schizosacch...    24   6.5  
SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   6.5  
SPBC342.03 |||1,3-beta-glucanosyltransferase |Schizosaccharomyce...    23   8.6  
SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar...    23   8.6  

>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 628

 Score = 27.1 bits (57), Expect = 0.70
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -2

Query: 240 LSLSGISKKHTIHSTVWILSGVQYY-FSVGSGFN 142
           +SLS    KH  HS +  +SG+ Y+  SVG+G +
Sbjct: 175 ISLSLTMNKHQGHSLLQTVSGLNYHTLSVGTGLS 208


>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1315

 Score = 26.6 bits (56), Expect = 0.93
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -1

Query: 271  RYLNFGSCHLP*SFRHQ 221
            R   FGSCH+P S RH+
Sbjct: 1038 RAKGFGSCHVPNSLRHK 1054


>SPCC338.07c |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 729

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 199 AVNGVLLADAGKTKEGGRNQSLDI 270
           A+ G+LL   G TKEG  N  L +
Sbjct: 48  AIKGILLHSLGNTKEGYDNVRLGL 71


>SPBC211.06 |gfh1||gamma tubulin complex subunit
           Gfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 577

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = -2

Query: 228 GISKKHT-IHSTVWILSGVQYY 166
           GIS+  T +  T+W LS +QYY
Sbjct: 443 GISQPWTQLWVTLWFLSSLQYY 464


>SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 452

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 246 TFLSLSGISKKHTIHST 196
           TF  L  +S++HT HST
Sbjct: 329 TFARLKNLSQRHTNHST 345


>SPBC342.03 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 456

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -3

Query: 284 GIASTISKLWFLPPSLVFPASARSTP 207
           G+A+ I  L+ L PS+   A+A++ P
Sbjct: 2   GVANIIYALFLLGPSIFLKATAQTHP 27


>SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 507

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 11/47 (23%), Positives = 23/47 (48%)
 Frame = -2

Query: 231 SGISKKHTIHSTVWILSGVQYYFSVGSGFN*YFTHFMVITNKGCKYY 91
           S I+ +   ++    L+G  + ++  +G + + TH   + NK   YY
Sbjct: 296 SSITNEQWSYNVGVYLAGTAFLYNYTNGSSVWQTHMEGLMNKALDYY 342


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,126,115
Number of Sequences: 5004
Number of extensions: 18431
Number of successful extensions: 42
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 87815546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)