Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS324H12f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    28   0.97 
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    28   0.97 
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   1.7  
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    26   3.9  
SPAP27G11.16 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   9.0  
SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces pomb...    25   9.0  
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF...    25   9.0  
SPCC126.04c |||SAGA complex subunit Sgf73 |Schizosaccharomyces p...    25   9.0  

>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -1

Query: 338 CALNFFPETQKLQSLHS*DTNSFLMRSYKLARLL 237
           C + +FP+     S HS D  +F  R Y L R L
Sbjct: 21  CFVKYFPKCSVQSSFHSYDELAFSRRLYNLPRTL 54


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1347

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 27/102 (26%), Positives = 42/102 (41%), Gaps = 19/102 (18%)
 Frame = +1

Query: 232 SCNNRASLYDRIKKLLVSYE-----WSDCNFCVSGKKFKAHKLILGISSPVFEAMLY--- 387
           S N    L++    +L SYE     +SD         F +HK IL   S     +L    
Sbjct: 593 SSNEMQLLFEGSIPILTSYENYKQSFSDVTIYCGTSMFHSHKFILCARSSFLRKLLLQKK 652

Query: 388 -GPLSN----------NNDIHIPDIEPEIFQLILNYIYTDNV 480
              +SN          ++ I + DI P    ++L+Y+YTD +
Sbjct: 653 KSSVSNIIYIEEITQSHSTIRVEDIPPLAVAILLHYLYTDTL 694


>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 601

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
 Frame = +1

Query: 307 FCVSGKKFKAHKLILGISSPVFEAMLYGPLS-NNNDIHIPD--IEPEIFQLILNYIYTDN 477
           F  SG  F   K+  GI  P+FE +  G     NN ++I    +EP+     L Y+++D 
Sbjct: 306 FLFSGTVFMRVKV--GI--PLFERLKVGTNKVKNNSVNIAQSFLEPQTRSTFLRYLFSDE 361

Query: 478 VDI 486
           V +
Sbjct: 362 VSV 364


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1428

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 217  LKNENSCNNRASLYDRIKKLLVSYEWSDCNFC 312
            +K EN CNN + L++ I++  +S      N C
Sbjct: 1048 IKQENLCNNGSLLFEAIEQNSLSKVMIPLNIC 1079


>SPAP27G11.16 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 104

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 15/59 (25%), Positives = 31/59 (52%)
 Frame = +1

Query: 181 LGSWIIKFKMGYLKNENSCNNRASLYDRIKKLLVSYEWSDCNFCVSGKKFKAHKLILGI 357
           +GS +  FK G + +EN+ N      +R   +       +CN C S +K K++++++ +
Sbjct: 1   MGSCLRFFKQGAILHENNTN----FTERSSSVFF-----ECNPCYSIEKLKSNRILIAV 50


>SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 516

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/49 (26%), Positives = 27/49 (55%)
 Frame = +3

Query: 150 TDIKS*HNSCPWFLDHQVQDGVFEKRKFVQQPSKFI*PH*ETVSILRME 296
           +D +S   S P    +++ + ++EK + V QP+  I P  + + +L+ E
Sbjct: 215 SDAESMAPSTPPKTVNELPEQIYEKPEIVLQPNSLIEPLGKIIQVLKRE 263


>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
           XPF|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 892

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = -1

Query: 206 LNLMIQEPRARIMSGFYVCISVLSLQINLR 117
           L++  ++PR R +   ++CI  L + ++LR
Sbjct: 644 LSITNEKPRVRSLYLMFICIKTLKVIVDLR 673


>SPCC126.04c |||SAGA complex subunit Sgf73 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 344

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = -1

Query: 392 GPYNMASKTGLLIPSISLCALNFFPETQKLQS 297
           GP ++  + G+L+P+  +CA +   +T  + S
Sbjct: 195 GPVDVEKQCGVLLPNGQMCARSLTCKTHSMSS 226


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,069,090
Number of Sequences: 5004
Number of extensions: 41520
Number of successful extensions: 97
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)