Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS324H12f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      36   3e-04
DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein ...    23   2.5  
AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein ...    23   2.5  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    22   4.4  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   5.8  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    21   7.7  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    21   7.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   7.7  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 35.9 bits (79), Expect = 3e-04
 Identities = 18/83 (21%), Positives = 37/83 (44%)
 Frame = +1

Query: 238 NNRASLYDRIKKLLVSYEWSDCNFCVSGKKFKAHKLILGISSPVFEAMLYGPLSNNNDIH 417
           N ++S+    + L    ++ D      G+  KAH+++L   SP F  +L      +  I 
Sbjct: 13  NYQSSITSAFENLRDDEDFVDVTLACDGRSLKAHRVVLSACSPYFRELLKSTPCKHPVIV 72

Query: 418 IPDIEPEIFQLILNYIYTDNVDI 486
           + D+       ++ +IY   V++
Sbjct: 73  LQDVAFSDLHALVEFIYHGEVNV 95


>DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein 6
           protein.
          Length = 125

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +1

Query: 223 NENSCNNRASLYDRIKKLLVSYEWSDCNFCVSGKKFKAHKLI 348
           +E  C N       +KK+L     + CN C   +K  A+K++
Sbjct: 49  DEGPCTNEGR---ELKKILPDALSTGCNKCNEKQKHTANKVV 87


>AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein
           protein.
          Length = 125

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +1

Query: 223 NENSCNNRASLYDRIKKLLVSYEWSDCNFCVSGKKFKAHKLI 348
           +E  C N       +KK+L     + CN C   +K  A+K++
Sbjct: 49  DEGPCTNEGR---ELKKILPDALSTGCNKCNEKQKHTANKVV 87


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -2

Query: 487 LCLRCLYRYN*VLAEIFLVLYQGYEYHY 404
           L L  L RY     E+++ LYQ  E HY
Sbjct: 220 LRLSRLVRYVSQWEEVYIPLYQQPERHY 247


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 382 LYGPLSNNNDIHIPDIEPEIFQLI 453
           L  P+SNNND  +  +   + QLI
Sbjct: 35  LIRPVSNNNDTVVVKLGLRLSQLI 58


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -1

Query: 281 TNSFLMRSYKLARLLHE 231
           TNS  MR Y+L + L E
Sbjct: 42  TNSGKMREYQLGQFLRE 58


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -1

Query: 281 TNSFLMRSYKLARLLHE 231
           TNS  MR Y+L + L E
Sbjct: 57  TNSGKMREYQLGQFLRE 73


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/42 (21%), Positives = 21/42 (50%)
 Frame = +1

Query: 391 PLSNNNDIHIPDIEPEIFQLILNYIYTDNVDITSIEQAFDLL 516
           PLS  + + +  I      L+    +TD V++T ++   +++
Sbjct: 612 PLSVPDSVELLFINNNYINLVRPNTFTDKVNLTRVDMYANMI 653


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,967
Number of Sequences: 438
Number of extensions: 3025
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)