Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS324H11f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0058 + 17548945-17548947,17549234-17549281,17549618-175496... 256 6e-69
01_03_0277 + 14496298-14496300,14496875-14496952,14497061-144972... 256 1e-68
02_01_0047 - 316960-317397,317647-317744,317837-318017,318122-31... 255 2e-68
09_04_0672 + 19367940-19368203,19368307-19368399,19368711-19370078 31 0.56
02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258 29 2.3
12_02_0513 - 19906147-19906271,19906470-19906791,19907091-199076... 29 3.0
08_02_0864 + 21994286-21994989,21996257-21996958,21997221-219973... 29 3.0
11_06_0087 - 19919224-19922304 28 4.0
02_01_0285 - 1913425-1914065,1914094-1914177,1914249-1915140,191... 28 4.0
08_02_1359 + 26382605-26382815,26382907-26382998,26383722-263837... 27 6.9
04_03_1015 - 21734381-21736534 27 6.9
02_05_0672 + 30775458-30775523,30775594-30775662,30775748-307757... 27 6.9
07_03_0183 - 14822973-14823139,14823232-14823627,14823861-148240... 27 9.1
>05_04_0058 +
17548945-17548947,17549234-17549281,17549618-17549695,
17549952-17550132,17550223-17550320,17550827-17551258
Length = 279
Score = 256 bits (628), Expect = 6e-69
Identities = 116/165 (70%), Positives = 136/165 (82%)
Frame = +2
Query: 23 ARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEV 202
ARG KKHLKRLNAP WMLDKLGG +AP+PS+GPHK RECLPL++ LRNRLKYALT EV
Sbjct: 18 ARGLKKHLKRLNAPSHWMLDKLGGAFAPKPSSGPHKARECLPLILILRNRLKYALTYREV 77
Query: 203 LKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKY 382
+ I+ QR + VDGKVRTD TYPAGFMDVVSI KT E FRL+YD KGRF +H I E+AK+
Sbjct: 78 ISILMQRHVMVDGKVRTDKTYPAGFMDVVSIAKTGENFRLLYDTKGRFRLHSIKDEDAKF 137
Query: 383 KLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIAT 517
KLCKV+ V G K +P+L T+DGRTIRYPDPLIK ND+I++D+ T
Sbjct: 138 KLCKVRSVQFGQKGIPFLNTNDGRTIRYPDPLIKANDTIKIDLET 182
>01_03_0277 +
14496298-14496300,14496875-14496952,14497061-14497241,
14497348-14497445,14497542-14497979
Length = 265
Score = 256 bits (626), Expect = 1e-68
Identities = 114/166 (68%), Positives = 137/166 (82%)
Frame = +2
Query: 20 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 199
MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ +RNRLKYALT E
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYRE 60
Query: 200 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 379
V+ I+ QR + VDGKVRTD TYPAGFMDV+SI KT E +RL+YD KGRF + + E+AK
Sbjct: 61 VISILMQRHVLVDGKVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAK 120
Query: 380 YKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIAT 517
+KLCKV+ V G K +PYL T+DGRTIRYPDPLIK ND+I++D+ T
Sbjct: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKIDLET 166
>02_01_0047 -
316960-317397,317647-317744,317837-318017,318122-318199,
319023-319025
Length = 265
Score = 255 bits (624), Expect = 2e-68
Identities = 113/166 (68%), Positives = 137/166 (82%)
Frame = +2
Query: 20 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 199
MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ +RNRLKYALT E
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYRE 60
Query: 200 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 379
V+ I+ QR + VDGKVRTD TYPAGFMDV+SI KT E +RL+YD KGRF + + E+AK
Sbjct: 61 VISILMQRHVLVDGKVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAK 120
Query: 380 YKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIAT 517
+KLCKV+ V G K +PYL T+DGRTIRYPDP+IK ND+I++D+ T
Sbjct: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPIIKANDTIKIDLET 166
>09_04_0672 + 19367940-19368203,19368307-19368399,19368711-19370078
Length = 574
Score = 31.1 bits (67), Expect = 0.56
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -1
Query: 164 SGKSPGASTRATCGDRLTVSVHTHRQVCPTSMLW 63
+G+SPG + RA GD L V+VH T++ W
Sbjct: 50 NGESPGPTIRAAQGDTLVVTVHNMLDTENTAIHW 83
>02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258
Length = 874
Score = 29.1 bits (62), Expect = 2.3
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = -3
Query: 177 FRRFLRKITRGKHSRNLWGPVDGLGAYTPPSLSNIHALGAFKR 49
F L ++ + L G G+G Y PPSLSN + AFKR
Sbjct: 35 FNVALNRLPASAGASPLLGHGHGVGVYYPPSLSNA-LVAAFKR 76
>12_02_0513 -
19906147-19906271,19906470-19906791,19907091-19907695,
19908569-19908617
Length = 366
Score = 28.7 bits (61), Expect = 3.0
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = -2
Query: 136 AQLVGTG*RSRCIHTAK-FVQHPCFGSV*ALQMLLRASR 23
++ V G R+RC+H A V+ P FG + ++L ASR
Sbjct: 39 SRAVKAGRRARCVHHASALVRPPSFGRLAMFVLILSASR 77
>08_02_0864 + 21994286-21994989,21996257-21996958,21997221-21997374,
21997494-21997838,21998323-21999240,21999312-21999640,
21999709-21999832,21999901-22000071,22000188-22001648,
22002647-22002910,22003866-22004189
Length = 1831
Score = 28.7 bits (61), Expect = 3.0
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Frame = +1
Query: 61 SQSMDVGQTWRCVCTETVNRSPQVARVLAPGDFPEESS----EVCFDRKRSPENCETTP 225
+QS+ V + RCV ETV + P + R+ G+F + + FD+ + +CE P
Sbjct: 894 NQSILVSLSSRCVWKETVCQRPHLLRIKYYGNFDKPLGRFLRDQLFDQNNNCISCELPP 952
>11_06_0087 - 19919224-19922304
Length = 1026
Score = 28.3 bits (60), Expect = 4.0
Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +3
Query: 414 DLRMFRTW*RMMAA-PSATQTHLSKSTIPSS*TLQLR 521
DL R W +A PS T HLS ++PSS T Q R
Sbjct: 208 DLSSARDWPLAIAMLPSLTALHLSSCSLPSSSTQQWR 244
>02_01_0285 -
1913425-1914065,1914094-1914177,1914249-1915140,
1915205-1915249,1915335-1915870,1915987-1916041
Length = 750
Score = 28.3 bits (60), Expect = 4.0
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +2
Query: 314 FRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGP 418
+ LIYD++G + + P++A L ++ V T P
Sbjct: 147 YALIYDIQGSLALPILDPDDASSPLAVLELVTTAP 181
>08_02_1359 +
26382605-26382815,26382907-26382998,26383722-26383791,
26383895-26384013,26384580-26384676,26384781-26384860,
26384986-26385180,26385460-26385520,26386408-26386468,
26386900-26386993,26387085-26387157,26387158-26387270,
26387444-26387587
Length = 469
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -1
Query: 209 FSGLRFRSKHTSDDSSGKSPGASTRATCG 123
FSGLR S+ S S SP A++ CG
Sbjct: 9 FSGLRLDSRRLSSSSLPTSPSAASSNGCG 37
>04_03_1015 - 21734381-21736534
Length = 717
Score = 27.5 bits (58), Expect = 6.9
Identities = 18/42 (42%), Positives = 25/42 (59%)
Frame = +3
Query: 378 STSCVKSSVWRPDLRMFRTW*RMMAAPSATQTHLSKSTIPSS 503
S+S V S+V+ LR+ T R +AA THL+ ST PS+
Sbjct: 38 SSSQVPSAVYASLLRL-ATSHRSLAAARRIATHLASSTAPST 78
>02_05_0672 + 30775458-30775523,30775594-30775662,30775748-30775797,
30775869-30775929,30776016-30776381,30776542-30776754,
30776826-30777056,30777502-30777615,30777703-30778495,
30778535-30778905,30779007-30779378,30779448-30780438,
30781068-30781141,30781953-30782030,30782448-30782525
Length = 1308
Score = 27.5 bits (58), Expect = 6.9
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = -2
Query: 283 IHKSSRISRVSPNFPINLYEALFHNFQDFVSG 188
+H+SS ++R++P F + Y L H + ++ G
Sbjct: 1024 LHRSSSVARIAPEFVV--YSELLHTKRSYMHG 1053
>07_03_0183 -
14822973-14823139,14823232-14823627,14823861-14824005,
14824174-14824380
Length = 304
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/36 (30%), Positives = 16/36 (44%)
Frame = -3
Query: 177 FRRFLRKITRGKHSRNLWGPVDGLGAYTPPSLSNIH 70
++RF+ K G W + G Y P +NIH
Sbjct: 64 WQRFVVKGISGFEKNRFWEDISGASIYKKPRTNNIH 99
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,647,647
Number of Sequences: 37544
Number of extensions: 333497
Number of successful extensions: 1038
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1006
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1037
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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