Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS324H10f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.10 |rpc17||DNA-directed RNA polymerase III complex subu...    46   3e-06
SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe...    29   0.32 
SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c...    28   0.73 
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    28   0.97 
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    26   3.0  
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    25   5.2  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    25   5.2  
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    25   6.8  
SPAC630.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.0  

>SPAPB1E7.10 |rpc17||DNA-directed RNA polymerase III complex subunit
           Rpc17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 129

 Score = 46.4 bits (105), Expect = 3e-06
 Identities = 29/115 (25%), Positives = 60/115 (52%), Gaps = 9/115 (7%)
 Frame = +2

Query: 203 METIKANSAFLCNYEVMQILQKLKDN----THKKHKREA----SLATVTYETVHYLQDT- 355
           M+ ++A  A+L N EV   L+++++     T ++   +A    +L T+ +E + YL    
Sbjct: 1   MKVLEARDAYLTNAEVFFHLKEMENEQNARTQERGAAQALVCENLRTIQFEILKYLSSQG 60

Query: 356 ECKNQSAQKIQKFLEAMKKYKLTKVEKLMMVNTPPRTELEIQLIVQESEERLSEE 520
            C+  + ++    +    +++LTK E L+++N  P +  E+   ++  EER  EE
Sbjct: 61  NCEGLTKERFLDCIAIFNEFELTKAEILVILNNKPSSVPELYACIEGIEERFKEE 115


>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 29.5 bits (63), Expect = 0.32
 Identities = 19/56 (33%), Positives = 29/56 (51%)
 Frame = -3

Query: 516 SDNLSSLSCTINCISNSVLGGVFTIINFSTLVSLYFFIASRNF*IFWAL*FLHSVS 349
           S+    LS  +  I N+ L  V+  I  S LVSL++F +  NF       F+++VS
Sbjct: 88  SNKSKKLSDQLQLIKNTSLISVYIGIVISLLVSLFYFYSLPNFPYSKTCIFIYTVS 143


>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 708

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +2

Query: 398 EAMKKYKLTKVEKLMMVNTPPRTELEIQLIVQESEERLSE 517
           E +KKY  TKVE++     PP + L    ++ E++  +S+
Sbjct: 170 EFLKKYSSTKVERVSEA-APPPSSLNSSTVLDENDSLISQ 208


>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
            Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -1

Query: 374  HSDFCILCLVSNVQSHM*QWQVKLLSYAFYV 282
            H  + ILC  ++V S +  W VK++  AF++
Sbjct: 1306 HPGYFILCFKASVNSPVTAWPVKVIPNAFFL 1336


>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1337

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 15/62 (24%), Positives = 31/62 (50%)
 Frame = +2

Query: 236 CNYEVMQILQKLKDNTHKKHKREASLATVTYETVHYLQDTECKNQSAQKIQKFLEAMKKY 415
           CN+    +L KL ++T    KR+  + + +  + H+   +  +N+ A  ++  L  MK  
Sbjct: 412 CNHAYNTMLCKLTEDTSSFLKRQTEMLSHSPASSHWASFSSLENEIA-NLKNLLSKMKST 470

Query: 416 KL 421
           +L
Sbjct: 471 EL 472


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1396

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 8/26 (30%), Positives = 19/26 (73%)
 Frame = +2

Query: 347 QDTECKNQSAQKIQKFLEAMKKYKLT 424
           ++T+C ++  QK++++LE + +  LT
Sbjct: 17  KNTKCPDKFEQKVEEYLEVLNELHLT 42


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
           Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 356 LCLVSNVQSHM*QWQVKLLSYAFYVCYLLTF 264
           LC ++ + SH+  WQ K+L    YV  L+ F
Sbjct: 693 LCNITFLGSHLCIWQPKILLGIMYVTDLVLF 723


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 407 KKYKLTKVEKLMMVNTPPRTELEIQLIVQESEERLSEE 520
           ++ K T+V  L +VN PP+T   + + +   E  L  E
Sbjct: 487 RRTKETRVNNLPIVNLPPKTIRTVSVNLLPEERALYNE 524


>SPAC630.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 166

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +2

Query: 284 HKKHKREASLATVTYETVHYLQDTEC 361
           H  H+RE S +  + +  H+++ T+C
Sbjct: 77  HSIHRRERSSSGASQQFEHHVRQTDC 102


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,066,931
Number of Sequences: 5004
Number of extensions: 39944
Number of successful extensions: 110
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)