Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS324H10f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0379 - 18352103-18352246,18352994-18353146,18353258-183533... 51 5e-07
07_03_1489 + 26933029-26933077,26933704-26933838,26934354-269344... 32 0.32
04_04_0173 - 23294511-23294601,23294719-23294849,23295160-232954... 31 0.56
11_08_0012 + 27623055-27623277,27623291-27625165,27625456-276255... 28 5.2
11_06_0099 + 20070925-20073867 27 9.1
11_01_0315 - 2347254-2347345,2347485-2347895,2348182-2349633,234... 27 9.1
06_02_0162 + 12466027-12466354,12466894-12467546 27 9.1
05_06_0085 + 25441460-25443504,25444263-25444536,25445091-25445468 27 9.1
>12_02_0379 -
18352103-18352246,18352994-18353146,18353258-18353375,
18353785-18353792
Length = 140
Score = 51.2 bits (117), Expect = 5e-07
Identities = 29/106 (27%), Positives = 53/106 (50%)
Frame = +2
Query: 203 METIKANSAFLCNYEVMQILQKLKDNTHKKHKREASLATVTYETVHYLQDTECKNQSAQK 382
M+ K N+ FL N+EV+ L+ T A +A + YL T NQ+ +
Sbjct: 1 MKIEKTNAGFLTNFEVLDFLRSRGAKTDPMGCLGA-VAASECKVYEYLLKTPACNQTRES 59
Query: 383 IQKFLEAMKKYKLTKVEKLMMVNTPPRTELEIQLIVQESEERLSEE 520
I +F+ + +KLT +KL ++N P + + +++E +R S++
Sbjct: 60 INEFVTRCESFKLTNADKLNVINWRPSSAADAYAMIEECGKRFSKD 105
>07_03_1489 +
26933029-26933077,26933704-26933838,26934354-26934478,
26934558-26934626,26934730-26934798,26935095-26935157,
26935280-26936533
Length = 587
Score = 31.9 bits (69), Expect = 0.32
Identities = 19/85 (22%), Positives = 43/85 (50%)
Frame = +2
Query: 200 NMETIKANSAFLCNYEVMQILQKLKDNTHKKHKREASLATVTYETVHYLQDTECKNQSAQ 379
+++ +KA + + +++ + L D H KHK ++ YE + ++ T K Q A+
Sbjct: 71 SLDNVKAQCHMILEDKRIELKEYLNDLCHDKHKVIDNICK-KYE-LENIEITNAKKQKAE 128
Query: 380 KIQKFLEAMKKYKLTKVEKLMMVNT 454
K+ + ++ K+ K + ++NT
Sbjct: 129 KLSREMKNKCNKKMPKSQGAKVLNT 153
>04_04_0173 -
23294511-23294601,23294719-23294849,23295160-23295483,
23296016-23296147,23296225-23296373,23296536-23296670,
23296997-23297090,23297199-23297318,23298096-23298182,
23298273-23298386,23299089-23299270,23299960-23300023,
23300191-23300337,23300636-23300845,23301048-23301217,
23301355-23301477,23301589-23301661,23301765-23301857
Length = 812
Score = 31.1 bits (67), Expect = 0.56
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = -2
Query: 388 LNFLGTLIFAFCVL*VMYSLICNSGK*SFSLMLFMCVIF*LLENLHNFI 242
LN+ G L CV+ + +CN GK +L L CVI +L++ + +
Sbjct: 691 LNYPGELSHRICVVTTILIFLCNDGKLHKNLSLGKCVIKGILQHTRHLM 739
>11_08_0012 +
27623055-27623277,27623291-27625165,27625456-27625567,
27625586-27626130,27626305-27626591,27626770-27626805
Length = 1025
Score = 27.9 bits (59), Expect = 5.2
Identities = 17/41 (41%), Positives = 24/41 (58%)
Frame = -3
Query: 510 NLSSLSCTINCISNSVLGGVFTIINFSTLVSLYFFIASRNF 388
N+S LS TI+ ISN + G + +FS V +F I+ NF
Sbjct: 241 NMSKLS-TISLISNGLTGPIPGNTSFSLPVLRWFAISKNNF 280
>11_06_0099 + 20070925-20073867
Length = 980
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2
Query: 194 NLNMETIKANSAFLCNYEVMQI 259
N NM T+KAN LCN EV+ +
Sbjct: 323 NGNMGTMKANLKNLCNLEVLDL 344
>11_01_0315 - 2347254-2347345,2347485-2347895,2348182-2349633,
2349688-2350045,2350818-2351177,2351321-2351419,
2351856-2351948,2352078-2352215,2352389-2352476,
2352682-2352770,2353113-2353178,2353370-2353481,
2354702-2354901
Length = 1185
Score = 27.1 bits (57), Expect = 9.1
Identities = 23/98 (23%), Positives = 38/98 (38%), Gaps = 5/98 (5%)
Frame = +2
Query: 122 WIYFKIKPKASDTLEKSNTK*YVLNLNMETIKANSAFLCNYEVMQILQKLKDNTHKKHKR 301
W+ FKIK K SD K + Y L + + Q + L H+ R
Sbjct: 928 WVEFKIKHKVSDD-NKWLKRMYNLRKKWAATYTKGRVFLSMKSNQRSESLNSKLHRLLDR 986
Query: 302 EASLATVTYETVHYL-----QDTECKNQSAQKIQKFLE 400
+ SL + H L Q+ E +++Q + +L+
Sbjct: 987 KMSLVILVEHYEHCLSRIHHQEAELDAKASQSVLSYLQ 1024
>06_02_0162 + 12466027-12466354,12466894-12467546
Length = 326
Score = 27.1 bits (57), Expect = 9.1
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Frame = +2
Query: 287 KKHKREASLATVTYETVHYLQDTECKNQSAQKIQKFLEAMKKYKLTKV-EKLMMVNTPPR 463
KK K+E SLA T T + + ++IQKF + + + + +V EKL++ +
Sbjct: 177 KKQKKEKSLAIETPRTQEIKIEQIKSKEPREEIQKFDKVLSEEEQWEVNEKLLLESYEEE 236
Query: 464 TEL--EIQLIVQE 496
L EI+ I +E
Sbjct: 237 NNLIEEIENIEEE 249
>05_06_0085 + 25441460-25443504,25444263-25444536,25445091-25445468
Length = 898
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +2
Query: 245 EVMQILQKLKDNTHKKHKREASLATVTYETVHYLQDTE--CKN 367
E + + ++ K H+KH R S V Y + ++QD E CK+
Sbjct: 527 EAISMSEREKQLRHEKHYRYVSTHDVAYWSKSFVQDLERACKD 569
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,882,695
Number of Sequences: 37544
Number of extensions: 205292
Number of successful extensions: 432
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 431
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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