Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS324H10f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46935-6|CAL36509.1| 128|Caenorhabditis elegans Hypothetical pr... 74 7e-14
U29536-2|AAA68790.1| 759|Caenorhabditis elegans Brf (transcript... 31 0.50
Z83127-6|CAB05633.1| 327|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z80214-6|CAB02266.1| 327|Caenorhabditis elegans Hypothetical pr... 29 2.7
AF000198-6|AAB53056.2| 526|Caenorhabditis elegans Calcium chann... 29 2.7
Z78413-1|CAB01663.1| 727|Caenorhabditis elegans Hypothetical pr... 28 3.5
U12965-3|AAZ32811.1| 980|Caenorhabditis elegans Hypothetical pr... 28 4.7
Z49132-6|CAA88985.1| 406|Caenorhabditis elegans Hypothetical pr... 27 6.2
U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein ... 27 6.2
AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein. 27 6.2
Z81054-8|CAB02886.3| 341|Caenorhabditis elegans Hypothetical pr... 27 8.1
AF016424-2|AAB65332.1| 720|Caenorhabditis elegans Peroxisome as... 27 8.1
AB012224-1|BAA76440.1| 720|Caenorhabditis elegans Pex6p homolog... 27 8.1
AB010968-1|BAA33544.1| 720|Caenorhabditis elegans PEX6 protein. 27 8.1
>Z46935-6|CAL36509.1| 128|Caenorhabditis elegans Hypothetical
protein M106.7 protein.
Length = 128
Score = 73.7 bits (173), Expect = 7e-14
Identities = 38/108 (35%), Positives = 59/108 (54%), Gaps = 2/108 (1%)
Frame = +2
Query: 203 METIKANSAFLCNYEVMQILQKLK--DNTHKKHKREASLATVTYETVHYLQDTECKNQSA 376
ME +K L N EV+ L LK ++ ++H+R L+TV YET YL + Q+
Sbjct: 1 MEVLKTRETMLTNQEVLSFLNALKKEEDNKQQHERCKQLSTVIYETKKYLNTSPAVTQNE 60
Query: 377 QKIQKFLEAMKKYKLTKVEKLMMVNTPPRTELEIQLIVQESEERLSEE 520
I + + + +KLT E L ++N P T +IQL+++E+EER E
Sbjct: 61 AVICELIPKLAPFKLTGAETLQVINLRPSTTADIQLLIEETEERFPSE 108
>U29536-2|AAA68790.1| 759|Caenorhabditis elegans Brf (transcription
factor) homologprotein 1 protein.
Length = 759
Score = 31.1 bits (67), Expect = 0.50
Identities = 15/47 (31%), Positives = 29/47 (61%), Gaps = 6/47 (12%)
Frame = -3
Query: 276 SFNFWRICITS*LHRNAELAFIVSMFKF------NTYHLVFDFSNVS 154
+FNF+++C++ L R + +V++ + NT HL+ DFS+V+
Sbjct: 105 AFNFYKMCVSRNLTRGRNRSSVVAVCMYITCRLENTAHLLLDFSDVT 151
>Z83127-6|CAB05633.1| 327|Caenorhabditis elegans Hypothetical
protein C27D8.1 protein.
Length = 327
Score = 28.7 bits (61), Expect = 2.7
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +2
Query: 326 YETVHYLQDTECKNQSAQKIQKFLEAMKKYKL 421
+ V+ +QD + K QSA K+++ +E K KL
Sbjct: 35 FGAVYLVQDNKSKKQSAMKVERKIEKRKHSKL 66
>Z80214-6|CAB02266.1| 327|Caenorhabditis elegans Hypothetical
protein C27D8.1 protein.
Length = 327
Score = 28.7 bits (61), Expect = 2.7
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +2
Query: 326 YETVHYLQDTECKNQSAQKIQKFLEAMKKYKL 421
+ V+ +QD + K QSA K+++ +E K KL
Sbjct: 35 FGAVYLVQDNKSKKQSAMKVERKIEKRKHSKL 66
>AF000198-6|AAB53056.2| 526|Caenorhabditis elegans Calcium channel,
beta subunit protein1 protein.
Length = 526
Score = 28.7 bits (61), Expect = 2.7
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = +2
Query: 116 PSWIYFKIK-PKASDTLEKSNTK*YVLNLNMETIKANSAFLCNYEVMQIL 262
P +Y KI PK L KS K N+N++ + A C E+ +L
Sbjct: 311 PIHVYIKISSPKVLQRLIKSRGKSQSRNMNVQMVAAEKLAQCQAELFDVL 360
>Z78413-1|CAB01663.1| 727|Caenorhabditis elegans Hypothetical
protein T01C3.1 protein.
Length = 727
Score = 28.3 bits (60), Expect = 3.5
Identities = 14/54 (25%), Positives = 30/54 (55%)
Frame = +2
Query: 269 LKDNTHKKHKREASLATVTYETVHYLQDTECKNQSAQKIQKFLEAMKKYKLTKV 430
++ +T KK + + +AT+TY+T H + ++ K + + ++ YK+T V
Sbjct: 169 MRVSTVKKMEEDCRMATITYKTAH-PKPSKVLTSGTPKSKAKAKTIEGYKVTSV 221
>U12965-3|AAZ32811.1| 980|Caenorhabditis elegans Hypothetical
protein F23F12.8 protein.
Length = 980
Score = 27.9 bits (59), Expect = 4.7
Identities = 23/92 (25%), Positives = 49/92 (53%), Gaps = 2/92 (2%)
Frame = +2
Query: 239 NYEVMQI-LQKLKDNTHKKHKREASLATVTYETVHYLQ-DTECKNQSAQKIQKFLEAMKK 412
N E+ +I L++ K + + E ++ + LQ + + KN+ ++++ LEA +K
Sbjct: 371 NRELERIRLEEKKRENERVRQEEIAMEISKIRELERLQLERQRKNE---RVRQELEAARK 427
Query: 413 YKLTKVEKLMMVNTPPRTELEIQLIVQESEER 508
YKL + E+ + + ++E++ I Q+ E R
Sbjct: 428 YKLQEEERQRKIQ---QQKVEMEQIRQQEEAR 456
>Z49132-6|CAA88985.1| 406|Caenorhabditis elegans Hypothetical
protein ZK666.6 protein.
Length = 406
Score = 27.5 bits (58), Expect = 6.2
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Frame = -3
Query: 333 VSYVTVASEASLLCFLCVLSFN-FWRICITS*LHRNAELAFIVSMFKFNTYHLVFDFSNV 157
VSY V S +C L V FN WR +S ++RN A++V+ F N + V +
Sbjct: 247 VSYTDVHSYRYGVCILPV-GFNAVWRAAKSSCMNRN---AYLVTEFDSNKHDYVLTAVSN 302
Query: 156 SLAFGLILKYIHEG 115
F + L Y H G
Sbjct: 303 YTGFSVPLTY-HNG 315
>U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein 418
protein.
Length = 1829
Score = 27.5 bits (58), Expect = 6.2
Identities = 25/101 (24%), Positives = 45/101 (44%), Gaps = 4/101 (3%)
Frame = +2
Query: 143 PKASDTLEKSNTK*YVLNLNMETIKANSAFLCNYEVMQILQKLKDNTHK-KHKREASLAT 319
PKAS N K +VL + ETI + L + E + + D H+ K+ +
Sbjct: 708 PKASKMKTTENMKFHVLLTSYETINMDKTILSSIEWGAL---VVDEAHRLKNNQSLFFKN 764
Query: 320 VTYETVHY---LQDTECKNQSAQKIQKFLEAMKKYKLTKVE 433
+ T+HY L T +N + +++ L + K + ++E
Sbjct: 765 LNEYTIHYRVLLTGTPLQN-NLEELFHLLNFLSKERFNQLE 804
>AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein.
Length = 1829
Score = 27.5 bits (58), Expect = 6.2
Identities = 25/101 (24%), Positives = 45/101 (44%), Gaps = 4/101 (3%)
Frame = +2
Query: 143 PKASDTLEKSNTK*YVLNLNMETIKANSAFLCNYEVMQILQKLKDNTHK-KHKREASLAT 319
PKAS N K +VL + ETI + L + E + + D H+ K+ +
Sbjct: 708 PKASKMKTTENMKFHVLLTSYETINMDKTILSSIEWGAL---VVDEAHRLKNNQSLFFKN 764
Query: 320 VTYETVHY---LQDTECKNQSAQKIQKFLEAMKKYKLTKVE 433
+ T+HY L T +N + +++ L + K + ++E
Sbjct: 765 LNEYTIHYRVLLTGTPLQN-NLEELFHLLNFLSKERFNQLE 804
>Z81054-8|CAB02886.3| 341|Caenorhabditis elegans Hypothetical
protein F01D4.7 protein.
Length = 341
Score = 27.1 bits (57), Expect = 8.1
Identities = 20/51 (39%), Positives = 26/51 (50%)
Frame = -2
Query: 505 LLTLLYNQLYFQFSPGRSVYHH*FLNFSELVFFHSF*ELLNFLGTLIFAFC 353
LL LY+ L S G +Y FLN+S L+ FH ++L F F FC
Sbjct: 26 LLVKLYHILLSVISMGSIIYF--FLNYSNLLAFHFNIKILFF-----FQFC 69
>AF016424-2|AAB65332.1| 720|Caenorhabditis elegans Peroxisome
assembly factor protein6 protein.
Length = 720
Score = 27.1 bits (57), Expect = 8.1
Identities = 14/42 (33%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Frame = +2
Query: 305 ASLATVTYETVHYLQDTECKNQSAQKIQK-FLEAMKKYKLTK 427
A +A + ET+ ++D + +NQS + Q+ LE++K++ TK
Sbjct: 679 AGMAAIV-ETIQSIEDGKTENQSIRVAQRHLLESVKRFHETK 719
>AB012224-1|BAA76440.1| 720|Caenorhabditis elegans Pex6p homolog
protein.
Length = 720
Score = 27.1 bits (57), Expect = 8.1
Identities = 14/42 (33%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Frame = +2
Query: 305 ASLATVTYETVHYLQDTECKNQSAQKIQK-FLEAMKKYKLTK 427
A +A + ET+ ++D + +NQS + Q+ LE++K++ TK
Sbjct: 679 AGMAAIV-ETIQSIEDGKTENQSIRVAQRHLLESVKRFHETK 719
>AB010968-1|BAA33544.1| 720|Caenorhabditis elegans PEX6 protein.
Length = 720
Score = 27.1 bits (57), Expect = 8.1
Identities = 14/42 (33%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Frame = +2
Query: 305 ASLATVTYETVHYLQDTECKNQSAQKIQK-FLEAMKKYKLTK 427
A +A + ET+ ++D + +NQS + Q+ LE++K++ TK
Sbjct: 679 AGMAAIV-ETIQSIEDGKTENQSIRVAQRHLLESVKRFHETK 719
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,195,929
Number of Sequences: 27780
Number of extensions: 216273
Number of successful extensions: 600
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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