Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS324H10f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor prot...    22   3.3  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   4.4  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    21   5.8  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   7.7  

>S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor
           protein.
          Length = 90

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
 Frame = -3

Query: 507 LSSLSCTINCISNSVL---GGVFTIINFSTLVSLYFFI 403
           L  L+CT   +   ++    G+F++ +F  LVS Y  I
Sbjct: 44  LFKLACTDTFMEGVIVLAFSGLFSVFSFLILVSSYIVI 81


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = -1

Query: 128 ISTKAVFDFNNMXXXXXXXXYWVKIVFL 45
           +ST  + ++++          WVK+VFL
Sbjct: 310 VSTILILNYHHRNADTHEMSEWVKVVFL 337


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 10/46 (21%), Positives = 21/46 (45%)
 Frame = -3

Query: 279 LSFNFWRICITS*LHRNAELAFIVSMFKFNTYHLVFDFSNVSLAFG 142
           +SFN W + +   +   A+  + +  FK N + + + +      FG
Sbjct: 1   MSFNIWWLILYFSIVCQAKAHYSLRDFKANIFQVKYQWKYFDYNFG 46


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -1

Query: 374 HSDFCILCLVS 342
           HSD C LCL S
Sbjct: 351 HSDSCCLCLDS 361


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,191
Number of Sequences: 438
Number of extensions: 2413
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)