Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS324H09f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase...   155   4e-39
SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera...    95   6e-21
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S...    81   7e-17
SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyc...    25   5.2  
SPAC16C9.02c |||S-methyl-5-thioadenosine phosphorylase|Schizosac...    25   6.8  
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||...    25   6.8  
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo...    25   9.0  

>SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase
           Fkh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 112

 Score =  155 bits (376), Expect = 4e-39
 Identities = 69/107 (64%), Positives = 83/107 (77%)
 Frame = +3

Query: 21  MGVTVETISPGDESTYPKSGQTVVVHYTGTLTNGKKFDSSRDRGKPFKFRIGKSEVIRGW 200
           MGV  + IS G+   +PK G  + +HYTGTLTNGKKFDSS DRG PF   IG  ++IRGW
Sbjct: 1   MGVEKQVISSGNGQDFPKPGDRITMHYTGTLTNGKKFDSSVDRGSPFVCTIGVGQLIRGW 60

Query: 201 DEGVAKMSVGERAKLTCSPDYAYGQQGHPGVIPPNSTLIFDVELLRL 341
           DEGV KMS+GE+AKLT +PDY YG +G PG+IPPNSTL+FDVELL +
Sbjct: 61  DEGVPKMSLGEKAKLTITPDYGYGPRGFPGLIPPNSTLLFDVELLAI 107


>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
           isomerase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 361

 Score = 95.1 bits (226), Expect = 6e-21
 Identities = 50/106 (47%), Positives = 66/106 (62%)
 Frame = +3

Query: 24  GVTVETISPGDESTYPKSGQTVVVHYTGTLTNGKKFDSSRDRGKPFKFRIGKSEVIRGWD 203
           GV V  +  G  ++   +G+ V + Y G L NGK FD +  +GKPF F +G+ EVIRGWD
Sbjct: 258 GVVVTDVKTGSGAS-ATNGKKVEMRYIGKLENGKVFDKNT-KGKPFAFILGRGEVIRGWD 315

Query: 204 EGVAKMSVGERAKLTCSPDYAYGQQGHPGVIPPNSTLIFDVELLRL 341
            GVA M  G   K+T     AYG Q  PG IP NSTL+F+V+L+R+
Sbjct: 316 VGVAGMQEGGERKITIPAPMAYGNQSIPG-IPKNSTLVFEVKLVRV 360


>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 362

 Score = 81.4 bits (192), Expect = 7e-17
 Identities = 47/103 (45%), Positives = 58/103 (56%)
 Frame = +3

Query: 27  VTVETISPGDESTYPKSGQTVVVHYTGTLTNGKKFDSSRDRGKPFKFRIGKSEVIRGWDE 206
           VTV+    GD     K  + V + Y G LTNGK FD +   GKPF F +G  EVI+GWD 
Sbjct: 260 VTVQDKVKGDGPA-AKRKKRVSMRYIGRLTNGKVFDKNIT-GKPFTFNLGLEEVIKGWDV 317

Query: 207 GVAKMSVGERAKLTCSPDYAYGQQGHPGVIPPNSTLIFDVELL 335
           G+  M VG    +      AYG +  PG IP NS L+FDV+LL
Sbjct: 318 GIVGMQVGGERTIHIPAAMAYGSKRLPG-IPANSDLVFDVKLL 359


>SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 920

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = -2

Query: 259 SGEQVNLARSPTDIFATPSSQPRITSDFPILNLKGLPRSRDESN 128
           +G   NLAR P+D+   P +    +S      L  LP+   E N
Sbjct: 216 AGSVPNLARIPSDVKPVPPAHLSASSTVGPRILPSLPKDTTEDN 259


>SPAC16C9.02c |||S-methyl-5-thioadenosine
           phosphorylase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 307

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +3

Query: 150 GKPFKFRIGKSEVIRGWDEGVAKMSVGERAKLTCSPDYAY 269
           G  F  R  +S + R W   +  MSV   AKL    + AY
Sbjct: 176 GPAFSTR-AESNLYRSWGASIINMSVIPEAKLAREAEIAY 214


>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 214

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +3

Query: 27  VTVETISPGDESTYPKSGQTVVVHYTGTLTNGKKFDS 137
           V+  ++  GD+  +P +GQT+ +  T    N KK  S
Sbjct: 175 VSNRSLEAGDDGVHPTAGQTLNIAPTMNDLNKKKSSS 211


>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
           Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 979

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +3

Query: 90  VVHYTGTLTNG-KKFDSSRDRGKPFKFRIGKSEV 188
           V H +   TN    + SSRD G PF  ++  +EV
Sbjct: 598 VYHISDDSTNSANSYMSSRDFGHPFVLQLSDNEV 631


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,250,706
Number of Sequences: 5004
Number of extensions: 45627
Number of successful extensions: 118
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)