Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS324H08f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    29   0.42 
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom...    28   0.73 
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1...    25   5.2  
SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual           25   6.8  
SPAC15F9.01c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   6.8  

>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
           Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 29.1 bits (62), Expect = 0.42
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 86  LYKSLLNNEHIHTILYLLKMEEWKN 160
           +Y++L +N  +HT+  L KM  W N
Sbjct: 54  IYRNLTSNSPLHTLSLLQKMASWNN 78


>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 834

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +2

Query: 230 GDRFHLHV*HILSLSFNNFRLALLSCSNGH 319
           G+  ++ V H+LSLS  NFR+  LS + G+
Sbjct: 203 GNYAYVEVVHLLSLSNKNFRILALSATPGN 232


>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
           Epe1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 948

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +3

Query: 264 YHLASTTSV*LCYRAQMAISNDSDRTILPQVTLKCVNME 380
           Y +  T+     Y A +  SNDSD+  LP +   C  +E
Sbjct: 317 YLIPGTSKNWEAYTAWLTSSNDSDKKFLPNMVDVCYCVE 355


>SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 604

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -1

Query: 209 FVHRSLASNASTLYDLYFSTPPFLINIKSYVY 114
           FV+  L S  S LYDL+F++P F     S+ +
Sbjct: 297 FVYNYLPSCPS-LYDLFFASPVFRKRTSSFYF 327


>SPAC15F9.01c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 227

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -3

Query: 153 HSSIFNKYKIVCICSLFNKDLYKMAI 76
           H S  +KYK++C+ S++ + L K +I
Sbjct: 133 HISGEDKYKVLCLFSIWRRKLGKCSI 158


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,895,156
Number of Sequences: 5004
Number of extensions: 36602
Number of successful extensions: 71
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)