Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS324H08f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032640-4|CAA21642.1|  369|Caenorhabditis elegans Hypothetical ...    29   2.7  
AF045642-2|AAC02580.1|  643|Caenorhabditis elegans Dynein chain,...    27   6.2  

>AL032640-4|CAA21642.1|  369|Caenorhabditis elegans Hypothetical
           protein Y43F8A.4 protein.
          Length = 369

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -1

Query: 179 STLYDLYFSTPPFLINIKSYVYVHYLIRIYTKWL 78
           ST + L+FST  F + I S  +V Y++  Y  W+
Sbjct: 156 STSWALFFSTILFSLVISSINHVRYIVMRYPDWV 189


>AF045642-2|AAC02580.1|  643|Caenorhabditis elegans Dynein chain,
           light intermediateprotein 1 protein.
          Length = 643

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 128 LYLLKMEEWKNIGHRVLTRLTLANDEQTYY 217
           LY+LK EEW     RVL+ +  +N+E   Y
Sbjct: 613 LYVLKSEEWNRFA-RVLSDMKQSNEEAENY 641


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,233,867
Number of Sequences: 27780
Number of extensions: 197270
Number of successful extensions: 445
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 445
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)