Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS324H06f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos...    30   0.18 
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa...    27   1.3  
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo...    27   1.7  
SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyce...    27   1.7  
SPAC9G1.09 |sid1||PAK-related kinase Sid1|Schizosaccharomyces po...    27   2.2  
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto...    26   3.9  
SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schiz...    25   5.2  
SPAC6F6.12 |||autophagy associated protein Atg24|Schizosaccharom...    25   6.8  
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1...    25   6.8  
SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inosito...    25   6.8  
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    25   6.8  
SPAC1834.07 |klp3|krp1|kinesin-like protein Klp3|Schizosaccharom...    25   6.8  
SPAC1B3.06c |||UbiE family methyltransferase |Schizosaccharomyce...    25   9.0  
SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   9.0  

>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 701

 Score = 30.3 bits (65), Expect = 0.18
 Identities = 18/72 (25%), Positives = 38/72 (52%)
 Frame = +3

Query: 66  KDLARSCVGGEELQQQKEKIXNLAEETASALKKNVYENYMQFIETATEISHLETEMYKLS 245
           K++ R+    + +Q +K  +    EE    L++NV  NY  FIE +  +S++   + K+ 
Sbjct: 15  KEIFRTHSIAQTIQLEKF-VSQQIEEKGRELQQNVCFNYQSFIEASENLSNIRNNLEKVL 73

Query: 246 HLLSEQRSVLTV 281
               E +S++++
Sbjct: 74  QNSYEFQSMVSL 85


>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
           Brl2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 680

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 19/74 (25%), Positives = 32/74 (43%)
 Frame = +3

Query: 111 QKEKIXNLAEETASALKKNVYENYMQFIETATEISHLETEMYKLSHLLSEQRSVLTVLSH 290
           + +K+    E   + ++    + Y  F+     +S    ++  L HLLSE    + VLS 
Sbjct: 267 EMDKLIMERENALNNVETTNLKKYSSFLALKEAVSMTSEQLRVLEHLLSECSHEINVLSQ 326

Query: 291 ASILGNENGLSRES 332
            S   N NG+   S
Sbjct: 327 QS--KNFNGVFESS 338



 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/51 (23%), Positives = 26/51 (50%)
 Frame = +3

Query: 6   MSEIDMDKFAVPDFVPERYVKDLARSCVGGEELQQQKEKIXNLAEETASAL 158
           + ++++    + +   E  +KD+    +  +EL+ + E + NLAEE    L
Sbjct: 19  LEDVEIQDDDIQEVSKEDLLKDVRVRSIQFDELESKIEGLQNLAEEKLKVL 69


>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
           SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1000

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 18/44 (40%), Positives = 24/44 (54%)
 Frame = +3

Query: 195 ETATEISHLETEMYKLSHLLSEQRSVLTVLSHASILGNENGLSR 326
           E   E   +E E++ LS L   +R V   +S ASI  N NGLS+
Sbjct: 40  EGGNESVSVEQEIFDLSQL--SERPVSETVSKASIPTNINGLSQ 81


>SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 578

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 14/71 (19%), Positives = 33/71 (46%)
 Frame = +3

Query: 42  DFVPERYVKDLARSCVGGEELQQQKEKIXNLAEETASALKKNVYENYMQFIETATEISHL 221
           +F  + Y+ D+ +  +  +E      K+  +       L+KN Y+N  +++  + E+  +
Sbjct: 68  NFDAQSYLNDVLQD-LSEDEFVSLYNKLLRIHMGVRKNLEKNFYKNLNEYVFISGEVESM 126

Query: 222 ETEMYKLSHLL 254
            ++  K   LL
Sbjct: 127 TSDFKKFQSLL 137


>SPAC9G1.09 |sid1||PAK-related kinase Sid1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 471

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 16/76 (21%), Positives = 31/76 (40%)
 Frame = +3

Query: 27  KFAVPDFVPERYVKDLARSCVGGEELQQQKEKIXNLAEETASALKKNVYENYMQFIETAT 206
           K    DF  + Y+K   RS +  ++L   +         +  +L KN+   ++  I    
Sbjct: 380 KSLTSDFAMKHYIKSTIRSMLLNDKLSATQRSSLESFYTSFISLDKNLSSKFVNQITPDN 439

Query: 207 EISHLETEMYKLSHLL 254
            + H + +   +S LL
Sbjct: 440 RLHHKKQKRSPISQLL 455


>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
           Sec74|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 928

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 17/66 (25%), Positives = 32/66 (48%)
 Frame = +3

Query: 147 ASALKKNVYENYMQFIETATEISHLETEMYKLSHLLSEQRSVLTVLSHASILGNENGLSR 326
           ++ LKKN+    ++  +    I  L+ ++   SHL    RSV      +S++G EN    
Sbjct: 784 SNTLKKNMLAQMIEIQKFKISIKFLKEDLEMDSHLQDYLRSVFP----SSVMGKENASED 839

Query: 327 ESLDNH 344
             L+++
Sbjct: 840 TILESN 845


>SPAC3A11.05c |kms1||meiotic spindle pole body protein
           Kms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = +3

Query: 198 TATEISHLETEMYKLSHLLSEQRSVLTVLSHASILG--NENGLSRESLDNHDV 350
           T  E+S L+     L    ++Q   +  LS A+     NEN + R +L+NH++
Sbjct: 285 TKKELSALQVRYATLLRKFTDQTKKIEELSLAASRSSENENTIRRLALENHEL 337


>SPAC6F6.12 |||autophagy associated protein
           Atg24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 401

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 17/67 (25%), Positives = 34/67 (50%)
 Frame = +3

Query: 96  EELQQQKEKIXNLAEETASALKKNVYENYMQFIETATEISHLETEMYKLSHLLSEQRSVL 275
           E LQ+   K+ +L  +  S+   N + +  + ++    I H +T + +L H+ SE ++V 
Sbjct: 285 EALQEYSAKL-SLERDKISSGGSNGF-SLSKTLDDLRGIDHNDTRLKRLEHVQSELQAVE 342

Query: 276 TVLSHAS 296
             +  AS
Sbjct: 343 QAIQEAS 349


>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
           complex subunit Tpr1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1039

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 102 LQQQKEKIXNLAEETASALKKNVYENYMQ 188
           +Q++KEK   LAEE A   +K   E  +Q
Sbjct: 876 IQREKEKARRLAEEEALLKEKQERERQLQ 904


>SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inositol
           pyrophosphate synthase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 920

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
 Frame = +2

Query: 116 GENTKFSRRNRKCPKEKCLRELYAVYRDCDGDI---PPRNRNVQAIAFVKRTAFCADCAL 286
           GE T  +R   K   E+  ++LY + RDC  D+       R V A A +   AF     +
Sbjct: 495 GEFTHSARYQSKDLGEQFHKDLYIMNRDCLKDVEIYTSSERRVSASAEIFAMAFLEQETI 554

Query: 287 P 289
           P
Sbjct: 555 P 555


>SPBC1826.01c |mot1||TATA-binding protein associated factor
           Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 2/92 (2%)
 Frame = +3

Query: 168 VYENYMQFIETATEISHLETEMYKLSHLLSEQRSVLTVLSHASILGNENGLSRESLDNHD 347
           V++N +    T  E +H    M  + +L++ +  +    SH+  L +        L NHD
Sbjct: 476 VFQNELGLTNTVWEAAH--GGMLGIKYLVAVKYPLF--FSHSDYLDSLINTVIHGLANHD 531

Query: 348 --VXXXXXXXXXKNKLNLITEKVESCMNLLDV 437
             V              L+ EK+ SC NLL V
Sbjct: 532 DDVRAVSALTLLPIADKLVQEKLSSCKNLLKV 563


>SPAC1834.07 |klp3|krp1|kinesin-like protein
           Klp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 554

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 195 ETATEISHLETEMYKLSHLLSEQRSVLTV 281
           E   ++S++E  M K+  LLSE+   LTV
Sbjct: 126 EYEVKVSYMEIYMEKIHDLLSEKNDRLTV 154


>SPAC1B3.06c |||UbiE family methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 278

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 18/67 (26%), Positives = 28/67 (41%)
 Frame = +3

Query: 51  PERYVKDLARSCVGGEELQQQKEKIXNLAEETASALKKNVYENYMQFIETATEISHLETE 230
           P + + D A   +  EE  + KEKI N +    S  K    +N    + T   + HL+  
Sbjct: 72  PSQELLDKAEEALRKEETLK-KEKINNCSFRLGSIYKLPFPDNTFDIVNTHQVLVHLQDP 130

Query: 231 MYKLSHL 251
           +  L  L
Sbjct: 131 VAALVEL 137


>SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 357

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -1

Query: 410 YLFCNEI*FIFSFLFCPLSL 351
           YLF N + ++F+ +F PL +
Sbjct: 203 YLFINALYYLFAIIFVPLGI 222


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,799,164
Number of Sequences: 5004
Number of extensions: 30088
Number of successful extensions: 110
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)