Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS324H06f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132877-8|CAD91705.1| 339|Caenorhabditis elegans Hypothetical ... 69 2e-12
AL132877-7|CAC70108.1| 686|Caenorhabditis elegans Hypothetical ... 69 2e-12
Z69902-11|CAA93766.2| 935|Caenorhabditis elegans Hypothetical p... 30 0.87
AL033535-1|CAB70217.1| 935|Caenorhabditis elegans Hypothetical ... 30 0.87
Z81128-4|CAB03403.1| 898|Caenorhabditis elegans Hypothetical pr... 29 2.7
AL110477-9|CAB54333.1| 540|Caenorhabditis elegans Hypothetical ... 29 2.7
Z81512-3|CAE46668.1| 3175|Caenorhabditis elegans Hypothetical pr... 28 4.7
Z81512-2|CAB04172.2| 3184|Caenorhabditis elegans Hypothetical pr... 28 4.7
U50184-1|ABJ99064.1| 1540|Caenorhabditis elegans Hypothetical pr... 28 4.7
AF039041-2|AAP46270.1| 587|Caenorhabditis elegans Hypothetical ... 27 6.2
>AL132877-8|CAD91705.1| 339|Caenorhabditis elegans Hypothetical
protein Y105E8B.2b protein.
Length = 339
Score = 69.3 bits (162), Expect = 2e-12
Identities = 46/166 (27%), Positives = 82/166 (49%), Gaps = 6/166 (3%)
Frame = +3
Query: 30 FAVPDFVPERYVKDLARSCVGGEE---LQQQKEKIXNLAEETASALKKNVYENYMQFIET 200
F F P Y++D + G+E L+ + ++ L + LK NV+ NY QFI+
Sbjct: 9 FQTDAFSPSDYIRDRLKGVKIGDETRKLRHLRSEMGALNHASQETLKNNVFRNYQQFIDA 68
Query: 201 ATEISHLETEMYKLSHLLSEQRSVLTVLSHASILGNENGLSRESLDNHDVXXXXXXXXXK 380
+ EISHLE E+Y+L+H L EQ+ V+ L + G + S+ H V
Sbjct: 69 SKEISHLEREIYQLTHSLIEQKQVIENLIMMT------GDDKSSI--HTVSSHSTTTSTT 120
Query: 381 NKLNLITEKVE---SCMNLLDVPDRTLLHEGDLLEIDAEENTALQR 509
N + ++ +K+E +N + ++ +L+ G++ + D E +Q+
Sbjct: 121 NPIQILMQKMEGIGGILNNMSTSEKVILY-GEMEQFDVETKKPVQK 165
>AL132877-7|CAC70108.1| 686|Caenorhabditis elegans Hypothetical
protein Y105E8B.2a protein.
Length = 686
Score = 69.3 bits (162), Expect = 2e-12
Identities = 46/166 (27%), Positives = 82/166 (49%), Gaps = 6/166 (3%)
Frame = +3
Query: 30 FAVPDFVPERYVKDLARSCVGGEE---LQQQKEKIXNLAEETASALKKNVYENYMQFIET 200
F F P Y++D + G+E L+ + ++ L + LK NV+ NY QFI+
Sbjct: 9 FQTDAFSPSDYIRDRLKGVKIGDETRKLRHLRSEMGALNHASQETLKNNVFRNYQQFIDA 68
Query: 201 ATEISHLETEMYKLSHLLSEQRSVLTVLSHASILGNENGLSRESLDNHDVXXXXXXXXXK 380
+ EISHLE E+Y+L+H L EQ+ V+ L + G + S+ H V
Sbjct: 69 SKEISHLEREIYQLTHSLIEQKQVIENLIMMT------GDDKSSI--HTVSSHSTTTSTT 120
Query: 381 NKLNLITEKVE---SCMNLLDVPDRTLLHEGDLLEIDAEENTALQR 509
N + ++ +K+E +N + ++ +L+ G++ + D E +Q+
Sbjct: 121 NPIQILMQKMEGIGGILNNMSTSEKVILY-GEMEQFDVETKKPVQK 165
>Z69902-11|CAA93766.2| 935|Caenorhabditis elegans Hypothetical
protein C47D12.8 protein.
Length = 935
Score = 30.3 bits (65), Expect = 0.87
Identities = 21/89 (23%), Positives = 42/89 (47%)
Frame = +3
Query: 63 VKDLARSCVGGEELQQQKEKIXNLAEETASALKKNVYENYMQFIETATEISHLETEMYKL 242
V+DL G++ +Q E++ ++ A+ L+K +++ E + + + ++
Sbjct: 245 VRDLRTCSTSGKQTDEQNEEMIHVPW-AATRLEKRLHDRRGHISEKQQRLLNDVASLREI 303
Query: 243 SHLLSEQRSVLTVLSHASILGNENGLSRE 329
L SE V TVLS +L N+ + E
Sbjct: 304 LQL-SENMDVATVLSRLQVLKNDRTVLEE 331
>AL033535-1|CAB70217.1| 935|Caenorhabditis elegans Hypothetical
protein C47D12.8 protein.
Length = 935
Score = 30.3 bits (65), Expect = 0.87
Identities = 21/89 (23%), Positives = 42/89 (47%)
Frame = +3
Query: 63 VKDLARSCVGGEELQQQKEKIXNLAEETASALKKNVYENYMQFIETATEISHLETEMYKL 242
V+DL G++ +Q E++ ++ A+ L+K +++ E + + + ++
Sbjct: 245 VRDLRTCSTSGKQTDEQNEEMIHVPW-AATRLEKRLHDRRGHISEKQQRLLNDVASLREI 303
Query: 243 SHLLSEQRSVLTVLSHASILGNENGLSRE 329
L SE V TVLS +L N+ + E
Sbjct: 304 LQL-SENMDVATVLSRLQVLKNDRTVLEE 331
>Z81128-4|CAB03403.1| 898|Caenorhabditis elegans Hypothetical
protein T23D8.4 protein.
Length = 898
Score = 28.7 bits (61), Expect = 2.7
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = +2
Query: 134 SRRNRKCPKEKCLRELYAVYRDCDGDIPPRNRNVQAIAFVKRTAFCADCALPRLN 298
S+ ++K K++ +R AV D D D P NR + F + D + +LN
Sbjct: 255 SKDDKKEKKKRVIRVKEAVEEDDDADWTPVNREKSVVHFDPKEEVTHDVMIKKLN 309
>AL110477-9|CAB54333.1| 540|Caenorhabditis elegans Hypothetical
protein Y113G7B.14 protein.
Length = 540
Score = 28.7 bits (61), Expect = 2.7
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Frame = +3
Query: 42 DFVPERYVKDLARSCVGGEELQQQKEKIXNLAE---ETA-SALKKNVYENYMQFIETATE 209
+ PE +K + EE +++EK N+AE ETA S +K +E+ ETA E
Sbjct: 324 NLAPEEPLKKAMDKFMDEEEKFKEEEKSFNMAEKNFETACSDDEKQAFESAKTTFETAKE 383
Query: 210 ISHLETEMYKLS 245
TE Y S
Sbjct: 384 KFTKATEEYTFS 395
>Z81512-3|CAE46668.1| 3175|Caenorhabditis elegans Hypothetical protein
F25C8.3b protein.
Length = 3175
Score = 27.9 bits (59), Expect = 4.7
Identities = 21/68 (30%), Positives = 32/68 (47%)
Frame = +3
Query: 96 EELQQQKEKIXNLAEETASALKKNVYENYMQFIETATEISHLETEMYKLSHLLSEQRSVL 275
E++QQ+KEK +E ALKK E +T + E L++L RS++
Sbjct: 1631 EKMQQEKEKEKEKEKEEKDALKKQSVEQDHSSTDTEEDAQLPEKNKPMLTYL----RSLV 1686
Query: 276 TVLSHASI 299
L H+ I
Sbjct: 1687 LQLVHSPI 1694
>Z81512-2|CAB04172.2| 3184|Caenorhabditis elegans Hypothetical protein
F25C8.3a protein.
Length = 3184
Score = 27.9 bits (59), Expect = 4.7
Identities = 21/68 (30%), Positives = 32/68 (47%)
Frame = +3
Query: 96 EELQQQKEKIXNLAEETASALKKNVYENYMQFIETATEISHLETEMYKLSHLLSEQRSVL 275
E++QQ+KEK +E ALKK E +T + E L++L RS++
Sbjct: 1640 EKMQQEKEKEKEKEKEEKDALKKQSVEQDHSSTDTEEDAQLPEKNKPMLTYL----RSLV 1695
Query: 276 TVLSHASI 299
L H+ I
Sbjct: 1696 LQLVHSPI 1703
>U50184-1|ABJ99064.1| 1540|Caenorhabditis elegans Hypothetical
protein W03A3.2 protein.
Length = 1540
Score = 27.9 bits (59), Expect = 4.7
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +3
Query: 15 IDMDKFAV-PDFVPERYVKDLARSCVGGEELQQQKEKIXNLAEETASALKKNVYENYMQF 191
+++ KF + + E L SC G E+ ++KE I + E T S + ++ +N + F
Sbjct: 705 VELPKFEENEENIQESCDSGLPDSCEGMEDELEEKENIVKMEEMTKSVTEMSLTDNTISF 764
>AF039041-2|AAP46270.1| 587|Caenorhabditis elegans Hypothetical
protein W03F8.10 protein.
Length = 587
Score = 27.5 bits (58), Expect = 6.2
Identities = 21/95 (22%), Positives = 47/95 (49%), Gaps = 6/95 (6%)
Frame = +3
Query: 66 KDLARSCVGGEELQQQKEKIXNLAEETASALKK-----NVYENYMQFIETAT-EISHLET 227
K L+ + + E++++ +K+ L ++ + +K N Q ++ A ++ HL+
Sbjct: 43 KALSDANISKEDIEEMSKKLALLKKQVIAGREKLGAIETRISNITQAVDFAQKDLEHLQK 102
Query: 228 EMYKLSHLLSEQRSVLTVLSHASILGNENGLSRES 332
E+ K++ E + + A +LG N ++RES
Sbjct: 103 EVDKVTKATIELEDKASKIKEADVLGAFN-ITRES 136
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,060,838
Number of Sequences: 27780
Number of extensions: 170022
Number of successful extensions: 503
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 503
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -