Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS324H04f
(331 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 30 0.10
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B... 26 1.3
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p... 26 1.3
SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit ... 25 2.2
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa... 25 3.0
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 25 3.9
SPBC25H2.08c |mrs2||magnesium ion transporter Mrs2|Schizosacchar... 24 5.2
SPAC3H8.10 |spo20|sec14|sec14 cytosolic factor family Sec14|Schi... 24 5.2
SPCC569.01c |||DUF1773 family protein 5|Schizosaccharomyces pomb... 24 6.8
SPCP20C8.01c |||B13958 domain|Schizosaccharomyces pombe|chr 3|||... 24 6.8
SPBC428.18 |cdt1||replication licensing factor Cdt1|Schizosaccha... 24 6.8
SPAC22G7.09c |nup45||nucleoporin Nup45|Schizosaccharomyces pombe... 24 6.8
SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces ... 23 9.0
SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase |Schi... 23 9.0
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 23 9.0
SPAC2F7.02c |||phosphoprotein phosphatase|Schizosaccharomyces po... 23 9.0
SPAC2E1P5.02c |mug109||sequence orphan|Schizosaccharomyces pombe... 23 9.0
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 29.9 bits (64), Expect = 0.10
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +3
Query: 51 SLEKAKKTIDLFFTVRSNAPELFCKRDPW 137
SL+ K+ ID +TV P FC DPW
Sbjct: 1076 SLDILKELIDSKYTVFDVLPAFFCHTDPW 1104
>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
Brl1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 692
Score = 26.2 bits (55), Expect = 1.3
Identities = 19/81 (23%), Positives = 40/81 (49%)
Frame = -1
Query: 262 TKLNRSRSVVLRRYMNTL*FSFVLFGRGSMSVTSKIRLISGAQGSLLQNSSGALERTVKN 83
+ L+ +R +L Y N L ++ R S T ++ + + + ++S ALE+ +KN
Sbjct: 389 SNLSNARVAILEGYSNRL----CIWDRIERSKTGEMNNVLDEKEEI--SASSALEKLIKN 442
Query: 82 RSMVFLAFSKLYFALLRNRSK 20
S + +Y A +++S+
Sbjct: 443 NSCLEAELPSMYAAFDQSQSR 463
>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 728
Score = 26.2 bits (55), Expect = 1.3
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +3
Query: 198 KENYKVFIYRLSTTDLDLFNFVDAVKTFFMLADTRL 305
K+ K+FI +STT DL F A+ T L + +
Sbjct: 254 KDQKKLFINDVSTTKYDLLTFSGAIHTVSSLINPEI 289
>SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit
Rrn6 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 868
Score = 25.4 bits (53), Expect = 2.2
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = -1
Query: 181 GSMSVTSKIRLISGAQGSLLQNSSGALER-TVKNRSMVFLAFSKLYFALLRNRSKRMSST 5
GS V K + I+ + + +S+ E + N L+ S+LY L NR+K+ + T
Sbjct: 548 GSSQVAMKFKTITPSVNTSEDDSANDQEIISTPNSDFQQLSLSRLYHVLCSNRNKKNTIT 607
>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
Par2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 627
Score = 25.0 bits (52), Expect = 3.0
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +3
Query: 15 ILLLRFLSSAKYSLEKAKKTIDLFFTVRSNAPELFCKRDPWAPEI 149
+L ++FL S + KAK +D F R A LF DP E+
Sbjct: 319 LLFIKFLESPDFRASKAKSLVDRRFFNRLLA--LFDTEDPREREL 361
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 24.6 bits (51), Expect = 3.9
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +3
Query: 126 RDPWAPEIKRIFDVTDMLPLPNKTKENYK 212
R +AP K DVTD LP +N K
Sbjct: 50 RIAYAPPEKHFVDVTDRFLLPETETQNLK 78
>SPBC25H2.08c |mrs2||magnesium ion transporter
Mrs2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 422
Score = 24.2 bits (50), Expect = 5.2
Identities = 17/77 (22%), Positives = 30/77 (38%)
Frame = -3
Query: 290 QHEESLNGVYEVEQIQIRGAQTIYEHXXXXXXXXXXX*HVGDIKDPFDLGCPGISLTEQL 111
+ ++ L G+Y E+++ + + +H V +I D I TE++
Sbjct: 260 EQDQDLAGMYLTERLKTGKPRDLDKHDEVELLLETYCKQVDEIVQQTDNLVGNIRSTEEI 319
Query: 110 RRIRADGEEQVYGLLGL 60
I D LLGL
Sbjct: 320 CNIMLDANRNSLMLLGL 336
>SPAC3H8.10 |spo20|sec14|sec14 cytosolic factor family
Sec14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 286
Score = 24.2 bits (50), Expect = 5.2
Identities = 9/20 (45%), Positives = 16/20 (80%)
Frame = +3
Query: 6 VDDILLLRFLSSAKYSLEKA 65
+DD LLRFL + K++L+++
Sbjct: 48 LDDATLLRFLRARKFNLQQS 67
>SPCC569.01c |||DUF1773 family protein 5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 323
Score = 23.8 bits (49), Expect = 6.8
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 159 FDVTDMLPLPNKTKENYKVFIYR 227
FD LP PN + E+ K+FI R
Sbjct: 7 FDNDYNLPPPNDSAEDLKIFIKR 29
>SPCP20C8.01c |||B13958 domain|Schizosaccharomyces pombe|chr
3|||Manual
Length = 247
Score = 23.8 bits (49), Expect = 6.8
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 159 FDVTDMLPLPNKTKENYKVFIYR 227
FD LP PN + E+ K+FI R
Sbjct: 7 FDNDYNLPPPNDSAEDLKIFIKR 29
>SPBC428.18 |cdt1||replication licensing factor
Cdt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 444
Score = 23.8 bits (49), Expect = 6.8
Identities = 14/26 (53%), Positives = 15/26 (57%)
Frame = -1
Query: 178 SMSVTSKIRLISGAQGSLLQNSSGAL 101
S SV SKI L S S +QNSS L
Sbjct: 272 SKSVNSKINLKSHQSSSSVQNSSRKL 297
>SPAC22G7.09c |nup45||nucleoporin Nup45|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 23.8 bits (49), Expect = 6.8
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -1
Query: 118 NSSGALERTVKNRSMVFLAFSKLYFALLRNRSKRM 14
NS AL +T+K +F+A S FA + + KR+
Sbjct: 380 NSPEALLKTIKEEHKLFMALSN-RFAQVHDEVKRL 413
>SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 444
Score = 23.4 bits (48), Expect = 9.0
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Frame = +3
Query: 12 DILLLRFLSSAKYSLEKAKKTIDLFFTVRS---NAPELFCKRD 131
D LLLRFL + K+++E A + RS N E+ C D
Sbjct: 124 DGLLLRFLRARKWNVEAALEMFMKTVHWRSREMNVGEIVCNAD 166
>SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 466
Score = 23.4 bits (48), Expect = 9.0
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Frame = +3
Query: 99 SNAPELFCKRDPWAPEIKRIF--DVTDMLPLPNKTKENYKVFIYRLSTTDLDLFNFVDAV 272
S AP K P+A E +I + + L N E Y+V + S ++ DL + V
Sbjct: 41 SQAPARTLK--PFASEDIKILLLENVNQSALSNLKDEGYQVEFLKTSMSEDDLVEKIKGV 98
Query: 273 KTFFMLADTRLT 308
+ + TRLT
Sbjct: 99 HAIGIRSKTRLT 110
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 23.4 bits (48), Expect = 9.0
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = -2
Query: 72 SSWPFPSCTLRCS 34
SS PFPSC +C+
Sbjct: 799 SSSPFPSCNTQCT 811
>SPAC2F7.02c |||phosphoprotein phosphatase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 325
Score = 23.4 bits (48), Expect = 9.0
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = +3
Query: 129 DPWAPEIKRIFDVTDMLPLPNKTKENYKVFIYRLSTT 239
DP PE+KR + +LP K E K I L T
Sbjct: 131 DPPLPEVKRYGEGNWLLPPIAKEDEGKKCLILDLDET 167
>SPAC2E1P5.02c |mug109||sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 163
Score = 23.4 bits (48), Expect = 9.0
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -1
Query: 202 SFVLFGRGSMSVTSKIRL 149
SFV+ G GS+++ IRL
Sbjct: 93 SFVMHGLGSLTINQNIRL 110
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,271,642
Number of Sequences: 5004
Number of extensions: 22768
Number of successful extensions: 80
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 91899990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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