Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS324H04f
(331 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0437 - 23533218-23536382 29 1.2
04_04_0307 - 24284817-24285386 29 1.2
11_06_0707 + 26467214-26470309 28 1.5
01_01_0532 - 3913156-3913203,3914720-3915274 28 1.5
02_02_0270 + 8431503-8431830,8431961-8432149,8434288-8434412,843... 27 3.6
09_04_0246 - 16024454-16024529,16024635-16024720,16024805-160248... 27 4.7
07_03_1200 + 24756052-24756102,24756153-24756497 27 4.7
11_06_0703 + 26444128-26446215,26446525-26447226 26 6.2
04_04_0302 - 24255456-24255935,24256723-24257604 26 6.2
08_02_0825 - 21570628-21570715,21571436-21571812,21572364-215727... 26 8.3
08_01_0846 - 8294616-8294828,8294938-8295019,8295661-8295803 26 8.3
>11_06_0437 - 23533218-23536382
Length = 1054
Score = 28.7 bits (61), Expect = 1.2
Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = +3
Query: 147 IKRIFDVT--DMLPLPNKTKENYKVFIYRLS 233
++RI VT DM+ LP KE YKV YR S
Sbjct: 549 VRRISVVTGKDMVVLPRMDKEEYKVRTYRTS 579
>04_04_0307 - 24284817-24285386
Length = 189
Score = 28.7 bits (61), Expect = 1.2
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +3
Query: 51 SLEKAKKTIDLFFTVRSNAPELFCKRDPWAPEIKRIFDVTDMLP 182
++ + ++ DL+FTV S PEL C A + R+ D P
Sbjct: 118 AMARGRRIHDLWFTVSSEKPELLCAGRDVARQGARLASYRDKYP 161
>11_06_0707 + 26467214-26470309
Length = 1031
Score = 28.3 bits (60), Expect = 1.5
Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Frame = +3
Query: 144 EIKRIFDVT--DMLPLPNKTKENYKVFIYRLS 233
+++RI VT DM+ LP+ K+ YKV YR S
Sbjct: 521 KVRRISVVTEKDMMVLPSINKDQYKVRTYRTS 552
>01_01_0532 - 3913156-3913203,3914720-3915274
Length = 200
Score = 28.3 bits (60), Expect = 1.5
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -2
Query: 60 FPSCTLRCSEIEAREC 13
FPSC LRC +IE C
Sbjct: 184 FPSCALRCEKIEKEGC 199
>02_02_0270 +
8431503-8431830,8431961-8432149,8434288-8434412,
8434527-8434703,8434798-8434871,8434978-8435713
Length = 542
Score = 27.1 bits (57), Expect = 3.6
Identities = 10/32 (31%), Positives = 22/32 (68%)
Frame = -1
Query: 259 KLNRSRSVVLRRYMNTL*FSFVLFGRGSMSVT 164
++ + + +++ RY NTL +++ GRG+M +T
Sbjct: 86 RIIQPQGLLVPRYTNTLSMVYIIQGRGTMGLT 117
>09_04_0246 -
16024454-16024529,16024635-16024720,16024805-16024894,
16025349-16025435,16026112-16026229,16026852-16026982,
16027619-16027909,16028000-16028124,16028209-16028334,
16028452-16028487,16028599-16028902
Length = 489
Score = 26.6 bits (56), Expect = 4.7
Identities = 10/37 (27%), Positives = 19/37 (51%)
Frame = +3
Query: 45 KYSLEKAKKTIDLFFTVRSNAPELFCKRDPWAPEIKR 155
K + KAK+ +D +R + + + +PW E +R
Sbjct: 55 KEKIRKAKEIVDNALKIREELHQKYLRAEPWLKEQER 91
>07_03_1200 + 24756052-24756102,24756153-24756497
Length = 131
Score = 26.6 bits (56), Expect = 4.7
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = -1
Query: 181 GSMSVTSKIRLISGAQGSLLQNSSGALERTVKNRSMVFLAFSKLYFALLR 32
G +V + + A G + N+ GA + + FLA KLYF LLR
Sbjct: 72 GGAAVAAYFLWPTAAVGGAIMNAPGAAGYVISRAA--FLANPKLYFHLLR 119
>11_06_0703 + 26444128-26446215,26446525-26447226
Length = 929
Score = 26.2 bits (55), Expect = 6.2
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Frame = +3
Query: 144 EIKRIFDVT--DMLPLPNKTKENYKVFIYRLS-TTDLDLFNFVDAVKTFFMLADTRLTED 314
+++R+ VT D + LP+ K+ YKV YR S + L ++N + T+ + D T
Sbjct: 517 KMRRVSVVTEKDTVVLPSMDKKQYKVRTYRTSYSKSLRVYNPLFKRLTYLRVLDLTGTLV 576
Query: 315 XDVPA 329
+P+
Sbjct: 577 QSIPS 581
>04_04_0302 - 24255456-24255935,24256723-24257604
Length = 453
Score = 26.2 bits (55), Expect = 6.2
Identities = 11/47 (23%), Positives = 26/47 (55%)
Frame = -3
Query: 146 LGCPGISLTEQLRRIRADGEEQVYGLLGLFQAVLCAAQKSKQENVIN 6
LGCP ++L + +++ + V+G+ L L + +K + E +++
Sbjct: 298 LGCPRLTLDGLISNLKSFNTKAVFGIKHLRVGTLFSLRKEQYEELLS 344
>08_02_0825 -
21570628-21570715,21571436-21571812,21572364-21572755,
21573943-21574311,21574395-21574580,21574709-21574845,
21575030-21575089,21575206-21575277,21575399-21575542,
21575702-21575773,21575928-21576060,21576157-21576247
Length = 706
Score = 25.8 bits (54), Expect = 8.3
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +3
Query: 81 LFFTVRSNAPELFCKRDPWAPEIKRIFDVTDMLPLPNKTKENY 209
LFF V S AP L +P PE++ + + L P+ N+
Sbjct: 9 LFFLVVSYAPFLAFSSEPLNPEVEALIAIRQGLVDPHGVLNNW 51
>08_01_0846 - 8294616-8294828,8294938-8295019,8295661-8295803
Length = 145
Score = 25.8 bits (54), Expect = 8.3
Identities = 11/47 (23%), Positives = 25/47 (53%)
Frame = -3
Query: 146 LGCPGISLTEQLRRIRADGEEQVYGLLGLFQAVLCAAQKSKQENVIN 6
LGCP ++L + +++ V+G+ L L + +K + E +++
Sbjct: 79 LGCPRLTLDGLISNLKSFNTNAVFGIKHLRVGTLFSLRKEQYEELLS 125
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,900,190
Number of Sequences: 37544
Number of extensions: 172217
Number of successful extensions: 500
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 500
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 447336660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -