Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS324H04f
         (331 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   0.41 
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    24   0.55 
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   2.9  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    20   6.7  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    20   8.9  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    20   8.9  

>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.2 bits (50), Expect = 0.41
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +2

Query: 173 HATSAEQNERELQSVHISSEHHGSGSVQLRRRR*DFLHAGR 295
           H T+ +Q    L   H+S +H+G+ S   R    +  H  R
Sbjct: 659 HVTNMDQYNSILMIEHLSPDHNGNYSCVARNLAAEVSHTQR 699


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.8 bits (49), Expect = 0.55
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -1

Query: 118 NSSGALERTVKNRSMVFLAFSKLYFALLRNRSKRMSSTS 2
           N S  +  T+    +++LAF  LYF    N + R++S S
Sbjct: 845 NESKHIGFTMYTTCVIWLAFVPLYFGTGNNVALRITSMS 883


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 2.9
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +2

Query: 212 SVHISSEHHGSGSVQL 259
           ++HI+S  HGS  ++L
Sbjct: 174 TIHIASWSHGSNEIKL 189


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 20.2 bits (40), Expect = 6.7
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +3

Query: 144 EIKRIFDVTDMLPLP 188
           E+KR+     +LPLP
Sbjct: 552 ELKRLKSTVSLLPLP 566


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 19.8 bits (39), Expect = 8.9
 Identities = 6/8 (75%), Positives = 6/8 (75%)
 Frame = +1

Query: 268  PLRLSSCW 291
            PLRL  CW
Sbjct: 1460 PLRLGPCW 1467


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 19.8 bits (39), Expect = 8.9
 Identities = 5/13 (38%), Positives = 10/13 (76%)
 Frame = -3

Query: 293 GQHEESLNGVYEV 255
           G+H E+  G+Y++
Sbjct: 312 GEHTEAEGGIYDI 324


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,276
Number of Sequences: 438
Number of extensions: 1764
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7342137
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)