Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS324H02f
         (323 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|...    91   4e-20
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    24   4.9  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      24   4.9  
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe...    24   4.9  
SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    24   4.9  
SPAC11D3.18c |||nicotinic acid plasma membrane transporter |Schi...    24   6.5  

>SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 387

 Score = 91.1 bits (216), Expect = 4e-20
 Identities = 39/70 (55%), Positives = 52/70 (74%)
 Frame = +1

Query: 85  ALCLIIQIITGLFLTIYYTANIEIAFYRVNYICRNVNYG*IIRTLHANGASFFFICIYLH 264
           A  L+IQI+ G+ L  +Y  N+++AF  V  I R+VNYG ++R  HANGASFFFI +YLH
Sbjct: 37  ACVLVIQIVIGILLACFYIPNMDLAFLSVERIVRDVNYGFLLRAFHANGASFFFIFLYLH 96

Query: 265 IGRGIYYESF 294
           IGRG+YY S+
Sbjct: 97  IGRGLYYGSY 106


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 24.2 bits (50), Expect = 4.9
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 168  SIKSYFNICCVIYC*K*SSNN 106
            S  +Y+  CC +Y  K SSNN
Sbjct: 1993 SSHTYYASCCFLYLFKSSSNN 2013


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 24.2 bits (50), Expect = 4.9
 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = +1

Query: 109 ITGLFLTIYYTANIEIAFYRVNYICR---NVNYG*IIRTLHA 225
           +TG+F      ++ E  F+R+ ++C     + Y  I  TLHA
Sbjct: 1   MTGMFFFASLFSSFESLFFRLFFVCSFFFPLLYSFIFATLHA 42


>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 24.2 bits (50), Expect = 4.9
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +3

Query: 93  SNNSNYYWIIFNNILHSKY*N--SFL*SKLYLPKCK 194
           SNN+NYY+ + ++ L+        F    L+L +CK
Sbjct: 104 SNNTNYYFEVSHDALYGALDRFAQFFIDPLFLEECK 139


>SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 255

 Score = 24.2 bits (50), Expect = 4.9
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = +1

Query: 244 FICIYLHIGRGIYYESFNLKY 306
           ++ I +H+G+ +  + FNL Y
Sbjct: 54  YLSIIMHVGQSLLLQKFNLGY 74


>SPAC11D3.18c |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 498

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -1

Query: 158 AISIFAV*YIVKNNPVXXXXIRHKASR 78
           A+SIF V YI+   P      R KASR
Sbjct: 101 AVSIFYVLYILVETPSVVLVKRIKASR 127


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,091,621
Number of Sequences: 5004
Number of extensions: 19440
Number of successful extensions: 42
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 87815546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)