Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS324H01f
(519 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces p... 29 0.55
SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces ... 29 0.55
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch... 28 0.96
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc... 28 0.96
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 27 2.2
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe... 27 2.2
SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyce... 26 2.9
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 26 2.9
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 25 5.1
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos... 25 5.1
SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase |Schizosac... 25 6.8
>SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 555
Score = 28.7 bits (61), Expect = 0.55
Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Frame = -3
Query: 340 FLFEYCC-WSGSQWSIIQQTVSIK 272
FLF YCC W W I+ +T I+
Sbjct: 375 FLFSYCCSWGPMGWVIVGETFPIR 398
>SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 557
Score = 28.7 bits (61), Expect = 0.55
Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Frame = -3
Query: 340 FLFEYCC-WSGSQWSIIQQTVSIK 272
FLF YCC W W I+ +T I+
Sbjct: 375 FLFSYCCSWGPMGWVIVGETFPIR 398
>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 979
Score = 27.9 bits (59), Expect = 0.96
Identities = 18/59 (30%), Positives = 30/59 (50%)
Frame = +2
Query: 125 VDPAADFLAREQNQLAGLEDELETSAPPPAISTSTNGFDDFVEVPSASAFDANGLLDDA 301
V+ D + E+N + E+ETS PPA+S ST ++ + S++ + L D A
Sbjct: 454 VEVHTDANSPEENNTPVTKKEVETS-KPPAVSGSTPPVNEAAVIESSNTLEKEPLSDVA 511
>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1576
Score = 27.9 bits (59), Expect = 0.96
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = -3
Query: 133 WIDLRFNETVSKIIHFQISFWNKSINRMRVDFQHS 29
W++ N+TV++II ++S+N M VDF+ S
Sbjct: 621 WVETEANDTVTEIISSDSESLSQSLN-MAVDFRQS 654
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 26.6 bits (56), Expect = 2.2
Identities = 10/34 (29%), Positives = 17/34 (50%)
Frame = +2
Query: 176 LEDELETSAPPPAISTSTNGFDDFVEVPSASAFD 277
L+D PP ++ N D+ +P+ S+FD
Sbjct: 2417 LKDAANYGLPPITMNVKVNDTGDYSNIPTVSSFD 2450
>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 871
Score = 26.6 bits (56), Expect = 2.2
Identities = 13/49 (26%), Positives = 24/49 (48%)
Frame = +2
Query: 191 ETSAPPPAISTSTNGFDDFVEVPSASAFDANGLLDDAPLGSTPTTVFKQ 337
E P S + GF+D+V P++ + ++ L S+P+T + Q
Sbjct: 348 EAGGSPSKSSPTRPGFNDYVNRPTSVMPSLSNMIVSPDLDSSPSTDWNQ 396
>SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 342
Score = 26.2 bits (55), Expect = 2.9
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +2
Query: 194 TSAPPPAISTSTNGFDDFVEVPSASAFDANGLLDDAPLGSTPTT 325
+S PP++ S N P+ S +D NGL P+GS T
Sbjct: 187 SSGKPPSLHLSGNRRLSMGS-PTKSIYDQNGLTTPRPIGSDDLT 229
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 26.2 bits (55), Expect = 2.9
Identities = 17/70 (24%), Positives = 29/70 (41%)
Frame = +2
Query: 2 EEFSHHFRQRVLKIYSHSVN*FVPKAYLKMDDFGDSFVEPEVDPAADFLAREQNQLAGLE 181
E+FS+H +L V P K +D +SF E+ + L + + +
Sbjct: 668 EQFSYHVEPNILSGSGIPVRVHTPS---KTEDLDESFSGSEISSSPSPLLPDVSDTVEEQ 724
Query: 182 DELETSAPPP 211
+L +PPP
Sbjct: 725 QKLLLKSPPP 734
>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1016
Score = 25.4 bits (53), Expect = 5.1
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +2
Query: 209 PAISTSTNGFDDFVEVPSASA 271
P I +ST +DFVEVP SA
Sbjct: 203 PQIFSSTLYINDFVEVPGTSA 223
>SPBC17D11.05 |tif32||translation initiation factor
eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 932
Score = 25.4 bits (53), Expect = 5.1
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +1
Query: 361 QNMARRTXEKIRRERC*GRTKEARNASDSQERTGGL 468
+ + +R E+IRRE+ R EA+ ++ + GGL
Sbjct: 606 EEINKRNAERIRREKEAIRINEAKKLAEELKAKGGL 641
>SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 574
Score = 25.0 bits (52), Expect = 6.8
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Frame = +2
Query: 161 NQLAGLEDELETS--APPPAISTSTNGFDDFVEVPSASAFDANGLLDDAPLGSTPT 322
N++ ++D L T P + G + ++PSAS + + L +P G PT
Sbjct: 375 NRIGSVDDLLNTRQFTSSPIGGSMPKGPNSIYKIPSASMVNLSSPLVTSPSGLNPT 430
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,914,816
Number of Sequences: 5004
Number of extensions: 34945
Number of successful extensions: 121
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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