Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS324H01f
(519 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0038 - 15778446-15778577,15778685-15779020,15779106-157792... 32 0.32
07_03_1762 - 29299328-29299437,29299782-29299871,29300487-293012... 30 0.97
08_01_0081 - 574119-575204,575794-576191,576321-576382,576581-57... 28 5.2
04_04_1634 + 34937087-34937198,34937652-34937790,34938263-349383... 28 5.2
08_02_1331 + 26195949-26196132,26196606-26196710,26197270-261981... 27 6.8
02_05_1247 + 35233756-35233785,35234902-35236107 27 6.8
01_01_0534 + 3920356-3920867,3921141-3922134 27 6.8
06_01_0415 + 2958746-2959110,2960468-2960593,2961314-2961998 27 9.0
02_05_0591 - 30183105-30183869 27 9.0
>06_03_0038 - 15778446-15778577,15778685-15779020,15779106-15779225,
15779280-15779765,15779861-15779994,15780111-15780230,
15784881-15785018,15785404-15786079,15786179-15786340,
15786424-15786618,15786839-15787084,15787758-15787952
Length = 979
Score = 31.9 bits (69), Expect = 0.32
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
Frame = +2
Query: 2 EEFSHHF--RQRVLKIYSHSVN*FVPKAYLKMDDFGDSFVE-PEVDPAAD----FLAREQ 160
++ HH+ Q+VLK S F+PK + K ++ FV+ P++ P ++ ++ R
Sbjct: 861 KQSQHHYPLAQKVLKRLSDGFQSFMPKVFKKFGNYHREFVKCPKMVPCSNDCAVYVIRYM 920
Query: 161 NQLAGLEDELETSAPPP 211
+ G D+L PP
Sbjct: 921 ERYQGNPDKLADDFQPP 937
>07_03_1762 -
29299328-29299437,29299782-29299871,29300487-29301291,
29301956-29303278
Length = 775
Score = 30.3 bits (65), Expect = 0.97
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Frame = +2
Query: 92 DDFGDSFVEPEVDPAADFLAREQNQLAGLEDE---LETSAPPP 211
++ GD EPE + ADF+ E+ + LEDE E AP P
Sbjct: 56 EEGGDDEAEPEDESDADFVGDEEEEEEDLEDEDDLEEVKAPRP 98
>08_01_0081 -
574119-575204,575794-576191,576321-576382,576581-576653,
576754-576824,576961-577148,577230-577377,577465-577503,
577601-577656,577745-577798,577900-578003,578117-578217,
578726-578796,578912-578968,579306-579422,579653-579682
Length = 884
Score = 27.9 bits (59), Expect = 5.2
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -2
Query: 494 KSVLHVICTSPPVLSW 447
K+VLH+ C PP +SW
Sbjct: 10 KAVLHMDCEKPPAISW 25
>04_04_1634 +
34937087-34937198,34937652-34937790,34938263-34938334,
34938414-34938546,34938591-34938730,34939478-34939585,
34939650-34939720,34940297-34940545,34940618-34940823,
34940894-34941026,34941099-34941101,34941136-34941293,
34941420-34941683,34941869-34942114
Length = 677
Score = 27.9 bits (59), Expect = 5.2
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = +2
Query: 26 QRVLKIYSHSVN*FVPKAYLKMDDFGDSFVEPEVDPAADFLAREQNQLAGLEDE 187
Q ++++ S + N P L + DF +F+ ++ P +L R Q L+DE
Sbjct: 193 QNLVQLRSTAHNGLCPSPRLNVGDFSYNFLVGKIPPCLKYLPRSSFQGNCLQDE 246
>08_02_1331 +
26195949-26196132,26196606-26196710,26197270-26198127,
26198669-26199458,26200240-26200329,26200636-26200712,
26200797-26201383
Length = 896
Score = 27.5 bits (58), Expect = 6.8
Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Frame = +2
Query: 104 DSFVEPEVDPAAD-FLA--REQNQLA-GLEDELETSAPPPAISTSTNGFDDFVEV 256
DS + PE DPA+ F++ RE+N LA G +DE SA P +ST V+V
Sbjct: 435 DSLI-PE-DPASQSFVSPLREENALASGSDDEKNDSAVQPEVSTEAKRTTSSVKV 487
>02_05_1247 + 35233756-35233785,35234902-35236107
Length = 411
Score = 27.5 bits (58), Expect = 6.8
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +2
Query: 104 DSFVEPEVDPAADFLAREQNQLAGLEDELETSAPPPAI-STSTN 232
D FV PEV E+ + E T+A PA+ +TSTN
Sbjct: 288 DQFVRPEVVVIQVITGAEEEGAQAPQQEANTAASDPAVDATSTN 331
>01_01_0534 + 3920356-3920867,3921141-3922134
Length = 501
Score = 27.5 bits (58), Expect = 6.8
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = -2
Query: 497 WKSVLHVICTSPPVLSW--LSEAFLASFVLPQHLSL 396
W S + IC P+++W +E FL ++ HL +
Sbjct: 383 WNSTIEGICAGVPMITWPHFAEQFLNEKLVVDHLKI 418
>06_01_0415 + 2958746-2959110,2960468-2960593,2961314-2961998
Length = 391
Score = 27.1 bits (57), Expect = 9.0
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +2
Query: 119 PEVDPAADFLAREQNQLAGLEDELETSAPPPAISTSTNGFDD 244
P+ DP+ + L ++ L +E PPP +T+TN DD
Sbjct: 222 PQADPSVELLVNFRHGLK-VETNGLAPPPPPPPTTTTNFHDD 262
>02_05_0591 - 30183105-30183869
Length = 254
Score = 27.1 bits (57), Expect = 9.0
Identities = 16/59 (27%), Positives = 25/59 (42%)
Frame = +2
Query: 77 AYLKMDDFGDSFVEPEVDPAADFLAREQNQLAGLEDELETSAPPPAISTSTNGFDDFVE 253
A+ K+ D ++ V F+ E N+ E +A + S GFDD+VE
Sbjct: 52 AHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSRLGFDDYVE 110
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,068,522
Number of Sequences: 37544
Number of extensions: 222914
Number of successful extensions: 781
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 778
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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