Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS324G12f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    31   0.10 
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc...    25   6.8  

>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 31.1 bits (67), Expect = 0.10
 Identities = 14/21 (66%), Positives = 16/21 (76%)
 Frame = +2

Query: 305  KSLPKGTCYYYITSCVFLSLS 367
            KSL KG CY Y+T  VFLS+S
Sbjct: 1070 KSLYKGFCYLYLTLKVFLSIS 1090


>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1573

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
 Frame = -3

Query: 99   WMRYEHNHYFICLILYNS--DEYINYFCNR 16
            W R   +HYFI  +L N   DE I Y  +R
Sbjct: 1004 WYRECRSHYFISPVLSNQVIDEKIQYSMSR 1033


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,940,846
Number of Sequences: 5004
Number of extensions: 36749
Number of successful extensions: 65
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)