Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS324G10f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.05c |||ribulose phosphate 3-epimerase |Schizosaccharomy...   118   5e-28
SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces pomb...    27   1.7  
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R...    27   2.2  
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    27   2.2  
SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|c...    25   6.8  
SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex sub...    25   9.0  

>SPAC31G5.05c |||ribulose phosphate 3-epimerase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 228

 Score =  118 bits (284), Expect = 5e-28
 Identities = 57/131 (43%), Positives = 85/131 (64%), Gaps = 2/131 (1%)
 Frame = +3

Query: 135 LKALIGPSILNADLSQLYEESQKLLDNGADYLHLDVMDGQFVPNLTFGHPVVKCLRGKI- 311
           ++A I PS+L  D + L +E  ++L  G+D+LH+DVMD QFVPNLT G  VVK +R    
Sbjct: 2   VQAKIAPSLLAGDFANLEKEVGRMLKYGSDWLHVDVMDAQFVPNLTIGPIVVKAMRNHYT 61

Query: 312 -KDAFFETHMMVEKPEQWITPMADAGVNQYTFHIEPVKDVIEVCRKVREHGMKVGVAIKP 488
            ++AFF+ H+MV +PE++I  +ADAG + + FH E  +   E+  +  E GM VG A+KP
Sbjct: 62  KEEAFFDCHLMVIEPERYIDQLADAGASLFCFHYEATEKHEEIISRAHEKGMLVGCALKP 121

Query: 489 GTPVSEVEKYI 521
            TPV  +  ++
Sbjct: 122 KTPVEVILPFV 132


>SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 515

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +2

Query: 215 WSRLFTFRCNGWSVCT 262
           WSR F   C G+SVCT
Sbjct: 6   WSRNFLCSCRGFSVCT 21


>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
           Res1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 637

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -1

Query: 389 DSSISHWCYPLLWFLNHHVSFKKGIFYFSSKALH 288
           D+ I +  YP    L+ H+S KK I YFS+K  H
Sbjct: 419 DNLIDNLKYPQS--LDDHLSSKKPISYFSNKLTH 450


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1428

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
 Frame = +3

Query: 120 KMTRHLKALIGPSILNADLSQLYEESQKLLD-NGADY----LHLDVMDGQFVPNLTFGH 281
           K   HLK +I  + LNA+  QLY E   L+   G  Y     +L+ +  QF  + +FG+
Sbjct: 779 KQHPHLKIIIMSATLNAEKFQLYFEGSNLITIPGKTYPVHRFYLEDILSQFGNDKSFGN 837


>SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 683

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = +3

Query: 105 IRSKTKMTRHLKALIGPSILNADLSQLYEESQKLLDN 215
           IRSK ++ +H K+ +G ++  A   + +E+ +    N
Sbjct: 559 IRSKLQLLKHFKSYMGQNLSKAVQDESFEKPKNSTSN 595


>SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex
           subunit Php4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 295

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 327 ETHMMVEKPEQWITPMADAGVNQYTFHIEP 416
           E +  V KP+   T   +  VNQY + +EP
Sbjct: 116 EVNSEVVKPDSATTENENRYVNQYNYPVEP 145


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,947,504
Number of Sequences: 5004
Number of extensions: 37061
Number of successful extensions: 94
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)