Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS324G10f
(521 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC072401-1|AAH72401.1| 228|Homo sapiens ribulose-5-phosphate-3-... 167 2e-41
BC016764-1|AAH16764.1| 228|Homo sapiens ribulose-5-phosphate-3-... 167 2e-41
BC005148-1|AAH05148.2| 228|Homo sapiens ribulose-5-phosphate-3-... 167 2e-41
DQ120706-1|ABC40667.1| 228|Homo sapiens rcRPE protein. 162 6e-40
AJ224326-1|CAA11895.1| 174|Homo sapiens ribulose-5-phosphate-ep... 90 5e-18
AK093658-1|BAC04212.1| 178|Homo sapiens protein ( Homo sapiens ... 64 3e-10
AK056028-1|BAB71076.1| 178|Homo sapiens protein ( Homo sapiens ... 64 3e-10
AC007038-1|AAX93087.1| 178|Homo sapiens unknown protein. 64 3e-10
BC028363-1|AAH28363.1| 931|Homo sapiens phosphatidylinositol gl... 29 7.5
AL137607-1|CAB70839.1| 825|Homo sapiens hypothetical protein pr... 29 7.5
AF109219-1|AAD11432.1| 931|Homo sapiens Mcd4p homolog protein. 29 7.5
>BC072401-1|AAH72401.1| 228|Homo sapiens
ribulose-5-phosphate-3-epimerase protein.
Length = 228
Score = 167 bits (407), Expect = 2e-41
Identities = 76/119 (63%), Positives = 96/119 (80%), Gaps = 1/119 (0%)
Frame = +3
Query: 147 IGPSILNADLSQLYEESQKLLDNGADYLHLDVMDGQFVPNLTFGHPVVKCLRGKI-KDAF 323
IGPSILN+DL+ L E ++LD+GADYLHLDVMDG FVPN+TFGHPVV+ LR ++ +D F
Sbjct: 7 IGPSILNSDLANLGAECLRMLDSGADYLHLDVMDGHFVPNITFGHPVVESLRKQLGQDPF 66
Query: 324 FETHMMVEKPEQWITPMADAGVNQYTFHIEPVKDVIEVCRKVREHGMKVGVAIKPGTPV 500
F+ HMMV KPEQW+ PMA AG NQYTFH+E ++ + + +RE+GMKVG+AIKPGT V
Sbjct: 67 FDMHMMVSKPEQWVKPMAVAGANQYTFHLEATENPGALIKDIRENGMKVGLAIKPGTSV 125
>BC016764-1|AAH16764.1| 228|Homo sapiens
ribulose-5-phosphate-3-epimerase protein.
Length = 228
Score = 167 bits (407), Expect = 2e-41
Identities = 76/119 (63%), Positives = 96/119 (80%), Gaps = 1/119 (0%)
Frame = +3
Query: 147 IGPSILNADLSQLYEESQKLLDNGADYLHLDVMDGQFVPNLTFGHPVVKCLRGKI-KDAF 323
IGPSILN+DL+ L E ++LD+GADYLHLDVMDG FVPN+TFGHPVV+ LR ++ +D F
Sbjct: 7 IGPSILNSDLANLGAECLRMLDSGADYLHLDVMDGHFVPNITFGHPVVESLRKQLGQDPF 66
Query: 324 FETHMMVEKPEQWITPMADAGVNQYTFHIEPVKDVIEVCRKVREHGMKVGVAIKPGTPV 500
F+ HMMV KPEQW+ PMA AG NQYTFH+E ++ + + +RE+GMKVG+AIKPGT V
Sbjct: 67 FDMHMMVSKPEQWVKPMAVAGANQYTFHLEATENPGALIKDIRENGMKVGLAIKPGTSV 125
>BC005148-1|AAH05148.2| 228|Homo sapiens
ribulose-5-phosphate-3-epimerase protein.
Length = 228
Score = 167 bits (407), Expect = 2e-41
Identities = 76/119 (63%), Positives = 96/119 (80%), Gaps = 1/119 (0%)
Frame = +3
Query: 147 IGPSILNADLSQLYEESQKLLDNGADYLHLDVMDGQFVPNLTFGHPVVKCLRGKI-KDAF 323
IGPSILN+DL+ L E ++LD+GADYLHLDVMDG FVPN+TFGHPVV+ LR ++ +D F
Sbjct: 7 IGPSILNSDLANLGAECLRMLDSGADYLHLDVMDGHFVPNITFGHPVVESLRKQLGQDPF 66
Query: 324 FETHMMVEKPEQWITPMADAGVNQYTFHIEPVKDVIEVCRKVREHGMKVGVAIKPGTPV 500
F+ HMMV KPEQW+ PMA AG NQYTFH+E ++ + + +RE+GMKVG+AIKPGT V
Sbjct: 67 FDMHMMVSKPEQWVKPMAVAGANQYTFHLEATENPGALIKDIRENGMKVGLAIKPGTSV 125
>DQ120706-1|ABC40667.1| 228|Homo sapiens rcRPE protein.
Length = 228
Score = 162 bits (394), Expect = 6e-40
Identities = 74/119 (62%), Positives = 95/119 (79%), Gaps = 1/119 (0%)
Frame = +3
Query: 147 IGPSILNADLSQLYEESQKLLDNGADYLHLDVMDGQFVPNLTFGHPVVKCLRGKI-KDAF 323
IGPSILN+DL+ L + ++LD+GADYLHLDVMDG FVPN+TFGHPVV+ LR ++ +D F
Sbjct: 7 IGPSILNSDLANLGAKCLQMLDSGADYLHLDVMDGHFVPNITFGHPVVESLRKQLGQDPF 66
Query: 324 FETHMMVEKPEQWITPMADAGVNQYTFHIEPVKDVIEVCRKVREHGMKVGVAIKPGTPV 500
F+ HMMV KPEQW+ PMA A NQYTFH+E ++ + + +RE+GMKVG+AIKPGT V
Sbjct: 67 FDMHMMVSKPEQWVKPMAVAEANQYTFHLEATENPGTLIKDIRENGMKVGLAIKPGTSV 125
>AJ224326-1|CAA11895.1| 174|Homo sapiens
ribulose-5-phosphate-epimerase protein.
Length = 174
Score = 89.8 bits (213), Expect = 5e-18
Identities = 38/63 (60%), Positives = 49/63 (77%)
Frame = +3
Query: 312 KDAFFETHMMVEKPEQWITPMADAGVNQYTFHIEPVKDVIEVCRKVREHGMKVGVAIKPG 491
+D FF+ HMMV KPEQW+ PMA AG NQYTFH+E ++ + + +RE+GMKVG+AIKPG
Sbjct: 9 QDPFFDMHMMVSKPEQWVKPMAVAGANQYTFHLEATENPGALIKDIRENGMKVGLAIKPG 68
Query: 492 TPV 500
T V
Sbjct: 69 TSV 71
>AK093658-1|BAC04212.1| 178|Homo sapiens protein ( Homo sapiens
cDNA FLJ36339 fis, clone THYMU2006365, highly similar to
Homo sapiens mRNA for putative
ribulose-5-phosphate-epimerase. ).
Length = 178
Score = 64.1 bits (149), Expect = 3e-10
Identities = 26/45 (57%), Positives = 34/45 (75%)
Frame = +3
Query: 333 HMMVEKPEQWITPMADAGVNQYTFHIEPVKDVIEVCRKVREHGMK 467
HMMV KPEQW+ PMA AG NQYTFH+E ++ + + +RE+GMK
Sbjct: 2 HMMVSKPEQWVKPMAVAGANQYTFHLEATENPGALIKDIRENGMK 46
>AK056028-1|BAB71076.1| 178|Homo sapiens protein ( Homo sapiens
cDNA FLJ31466 fis, clone NT2NE2001372, highly similar to
Homo sapiens mRNA for putative
ribulose-5-phosphate-epimerase. ).
Length = 178
Score = 64.1 bits (149), Expect = 3e-10
Identities = 26/45 (57%), Positives = 34/45 (75%)
Frame = +3
Query: 333 HMMVEKPEQWITPMADAGVNQYTFHIEPVKDVIEVCRKVREHGMK 467
HMMV KPEQW+ PMA AG NQYTFH+E ++ + + +RE+GMK
Sbjct: 2 HMMVSKPEQWVKPMAVAGANQYTFHLEATENPGALIKDIRENGMK 46
>AC007038-1|AAX93087.1| 178|Homo sapiens unknown protein.
Length = 178
Score = 64.1 bits (149), Expect = 3e-10
Identities = 26/45 (57%), Positives = 34/45 (75%)
Frame = +3
Query: 333 HMMVEKPEQWITPMADAGVNQYTFHIEPVKDVIEVCRKVREHGMK 467
HMMV KPEQW+ PMA AG NQYTFH+E ++ + + +RE+GMK
Sbjct: 2 HMMVSKPEQWVKPMAVAGANQYTFHLEATENPGALIKDIRENGMK 46
>BC028363-1|AAH28363.1| 931|Homo sapiens phosphatidylinositol
glycan anchor biosynthesis, class N protein.
Length = 931
Score = 29.5 bits (63), Expect = 7.5
Identities = 15/64 (23%), Positives = 27/64 (42%)
Frame = -1
Query: 479 CNSYLHSVLSNFSAHFYYIFDRFYMKCVLIDSSISHWCYPLLWFLNHHVSFKKGIFYFSS 300
C +H L S +Y+ +DRF++ ++ + Y L + H + KG+
Sbjct: 421 CKELIHLALKGLS--YYHTYDRFFLGVNVVIGFVGWISYASLLIIKSHSNLIKGVSKEVK 478
Query: 299 KALH 288
K H
Sbjct: 479 KPSH 482
>AL137607-1|CAB70839.1| 825|Homo sapiens hypothetical protein
protein.
Length = 825
Score = 29.5 bits (63), Expect = 7.5
Identities = 15/64 (23%), Positives = 27/64 (42%)
Frame = -1
Query: 479 CNSYLHSVLSNFSAHFYYIFDRFYMKCVLIDSSISHWCYPLLWFLNHHVSFKKGIFYFSS 300
C +H L S +Y+ +DRF++ ++ + Y L + H + KG+
Sbjct: 315 CKELIHLALKGLS--YYHTYDRFFLGVNVVIGFVGWISYASLLIIKSHSNLIKGVSKEVK 372
Query: 299 KALH 288
K H
Sbjct: 373 KPSH 376
>AF109219-1|AAD11432.1| 931|Homo sapiens Mcd4p homolog protein.
Length = 931
Score = 29.5 bits (63), Expect = 7.5
Identities = 15/64 (23%), Positives = 27/64 (42%)
Frame = -1
Query: 479 CNSYLHSVLSNFSAHFYYIFDRFYMKCVLIDSSISHWCYPLLWFLNHHVSFKKGIFYFSS 300
C +H L S +Y+ +DRF++ ++ + Y L + H + KG+
Sbjct: 421 CKELIHLALKGLS--YYHTYDRFFLGVNVVIGFVGWISYASLLIIKSHSNLIKGVSKEVK 478
Query: 299 KALH 288
K H
Sbjct: 479 KPSH 482
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,846,448
Number of Sequences: 237096
Number of extensions: 1226214
Number of successful extensions: 2506
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2502
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4990119376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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