Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS324G08f
         (494 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha...    27   1.2  
SPBP35G2.09 |usp103|yhc1|U1 snRNP-associated protein Usp103 |Sch...    27   1.6  
SPAC9.09 |met26||homocysteine methyltransferase|Schizosaccharomy...    25   6.3  
SPAC2C4.06c |||rRNA methyltransferase |Schizosaccharomyces pombe...    25   8.3  
SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces pomb...    25   8.3  
SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca...    25   8.3  
SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit Sen2|Sc...    25   8.3  

>SPAC20G8.08c |fft1||fun thirty related protein
           Fft1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 16/56 (28%), Positives = 25/56 (44%)
 Frame = +1

Query: 235 EEFEEDRADGAKVKSVCTFEGNTLKQVQKAPDGLEVTYVREFGPEEMKAVMTAKDV 402
           EE  ED   G    + CT + N    + +  D +E   +   GP E++  M+  DV
Sbjct: 220 EETNEDDLLGQS-PTACTTDANIDNSIPENSDKIEEVSIESSGPSEVEDEMSEYDV 274


>SPBP35G2.09 |usp103|yhc1|U1 snRNP-associated protein Usp103
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 182

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +2

Query: 407 APESTRSSKRTLLRGRESVPPIHEHPR 487
           AP++T SS   L + ++S+P  +EH R
Sbjct: 128 APQTTASSNTQLTQQQQSLPQTNEHQR 154


>SPAC9.09 |met26||homocysteine methyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 764

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +1

Query: 55  YKMTSSENFDEFMKTIGVGLITR 123
           +K++S++  DEF++    G+ITR
Sbjct: 140 FKLSSTKALDEFLEAKEAGIITR 162


>SPAC2C4.06c |||rRNA methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 455

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +1

Query: 259 DGAKVKSVCTFEGNTLKQVQKAPDGLEVTY 348
           D  +++++C+F+   LK   + P+   VTY
Sbjct: 313 DTERLENLCSFQSTILKHALQFPNCRHVTY 342


>SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 510

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -1

Query: 494 NNXADVRESAAPTPDLGVESFYWTL*TLVQVTSLAVITAF 375
           N+ A +     P+PDLG  ++ W    L+ V +L +I  F
Sbjct: 447 NDFASLPSVPKPSPDLGNGNYKWLYLGLIPV-ALTIIILF 485


>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
           catalytic subunit Arm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 811

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -1

Query: 197 EEVTKLYSSPSLRSSTVGVTALAALRVIRPTPM 99
           +E T +YS+ SL  +  G  ALA L  ++ TP+
Sbjct: 7   KESTIVYSALSLAQAGRGPEALALLEPLKSTPI 39


>SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit
           Sen2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 380

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = -1

Query: 179 YSSPSLRSSTVGVTALAALRVIRPTPMVFMNSSKFSEEVILY 54
           +  P +      +T LAA    R    V  N +KFS + +LY
Sbjct: 240 HEDPIIEPDNKFLTELAAYFYFRQQGWVVKNGTKFSVDFLLY 281


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,938,586
Number of Sequences: 5004
Number of extensions: 36268
Number of successful extensions: 94
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)