Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS324G08f
         (494 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0484 - 29401195-29401404,29401572-29401755,29401866-294039...    29   2.1  
11_03_0084 + 9696368-9696554,9696648-9696718,9696821-9696901,969...    29   2.7  
02_01_0436 - 3166764-3166949,3167115-3167258,3167343-3167469,316...    27   6.3  
10_08_0308 + 16660751-16661450,16661656-16661819,16662615-166628...    27   8.3  
09_02_0192 - 5589395-5590021,5590120-5590560,5590781-5591242           27   8.3  
03_02_0254 + 6862762-6863663,6863994-6864241,6864323-6864465,686...    27   8.3  

>02_05_0484 -
           29401195-29401404,29401572-29401755,29401866-29403973,
           29404320-29404403,29404507-29404777,29404864-29405117,
           29405513-29405722,29406357-29406503
          Length = 1155

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 20/76 (26%), Positives = 37/76 (48%)
 Frame = +1

Query: 25  SIKMEFVGKKYKMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTF 204
           S+K   V +K K+   +N         + L   +    +  T +L+K+ DEY + ++S  
Sbjct: 444 SLKATVVAEKEKILQEQN--------NLKLTEEERQEHIMLTAQLKKEIDEYRMRSNSLS 495

Query: 205 KTTEMKFKPGEEFEED 252
           + TE   K  ++FEE+
Sbjct: 496 EETEDLRKQRQKFEEE 511


>11_03_0084 +
           9696368-9696554,9696648-9696718,9696821-9696901,
           9697139-9697206,9697335-9697437,9700422-9700567,
           9700686-9700803,9701693-9701797,9702333-9702434,
           9702518-9702655,9703475-9703603,9703682-9703762,
           9703883-9703957,9704861-9705028,9705125-9705242,
           9705345-9705409,9705547-9705637,9705801-9705885,
           9706006-9706084,9706317-9706414,9707029-9707137,
           9707224-9707292,9707770-9707835,9707952-9708041,
           9708416-9708526
          Length = 850

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +1

Query: 361 GPEEMKAVMTAKDVTCTRVYKVQ*KDSTPRSGVGAADSRTS 483
           G + ++  M AKD T  +V +V  KD    S VG ADS+ +
Sbjct: 159 GMDVVEMAMWAKDNTTVKVTQVSTKDGPIESLVGEADSQVA 199


>02_01_0436 -
           3166764-3166949,3167115-3167258,3167343-3167469,
           3167746-3167825,3167933-3168184,3168271-3168399,
           3169039-3169088,3169221-3169323,3169429-3169548,
           3169725-3169786,3169873-3169915,3169995-3170183,
           3170299-3170367,3170460-3170539,3170648-3170723
          Length = 569

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -3

Query: 423 LVDSGASHVLSCHHSFHLLRAEFPDVSDFKTVGG 322
           L+D+           +HL   +FPDV  FK V G
Sbjct: 498 LIDNLGDEFAKVQREYHLPAGDFPDVEHFKEVLG 531


>10_08_0308 +
           16660751-16661450,16661656-16661819,16662615-16662800,
           16663297-16663533
          Length = 428

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = +3

Query: 99  HRRGSDHPQSRQRCHPDRGAP 161
           HRRG      RQRC   RGAP
Sbjct: 87  HRRGPSLVPGRQRCGGARGAP 107


>09_02_0192 - 5589395-5590021,5590120-5590560,5590781-5591242
          Length = 509

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 12/32 (37%), Positives = 22/32 (68%), Gaps = 2/32 (6%)
 Frame = -3

Query: 321 LLDLLQGVAFECAYGFHL--STVSAVLFELFA 232
           L+D+L G+  +  +GFHL  S + A++ ++FA
Sbjct: 274 LVDVLIGLQGKGGFGFHLDNSKIKAIILDMFA 305


>03_02_0254 +
           6862762-6863663,6863994-6864241,6864323-6864465,
           6864532-6864570,6865403-6865501
          Length = 476

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 153 HGRGDSVGGFAGDQTHADGLH 91
           HG G + G F G + H DG+H
Sbjct: 271 HGFGRTNGQFLGGRAHGDGVH 291


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,540,997
Number of Sequences: 37544
Number of extensions: 275922
Number of successful extensions: 767
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1035514020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)