Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS324G07f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC830.10 |||nucleoside triphosphatase |Schizosaccharomyces pom...   164   6e-42
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha...    28   0.73 
SPAC3G9.07c |hos2|hda1, phd1|histone deacetylase |Schizosaccharo...    25   5.2  
SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces...    25   5.2  

>SPCC830.10 |||nucleoside triphosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 188

 Score =  164 bits (399), Expect = 6e-42
 Identities = 72/153 (47%), Positives = 104/153 (67%)
 Frame = +2

Query: 2   VVSHKLDLPELQGEIDEVSIKKCQEAARLLKQAVIVEDTSLCFNALCGLPGPYIKWFLDK 181
           + +H  DLPE+QG + EV ++KC+ AA ++K  V+VEDT L + A+ GLPGPY+KWFL+ 
Sbjct: 30  IKNHDYDLPEIQGSVKEVVLEKCKAAAEIVKGPVLVEDTWLGYKAMNGLPGPYVKWFLNS 89

Query: 182 LKPEGLPRLLAGWEDKSAVAVCTFAYCSGEKDNVILFQGRTKGIIVEPRGTRDFGWDCVF 361
           + P+GL R+++ ++ K A A CTF Y  G    + LF+G   G +V PRG+  FGW+ +F
Sbjct: 90  VGPDGLYRMVSAFDTKEAQAGCTFGYTKGPGKPIHLFEGILDGQVVPPRGSNGFGWNSIF 149

Query: 362 QPAGYNKTYAELPKTEKNLISHRYKALEKLRNY 460
           QP G+  TYAE+   E+N  SHRY A  KLR++
Sbjct: 150 QPNGHKHTYAEMTDEERNSCSHRYLAAMKLRDF 182


>SPAC20G8.08c |fft1||fun thirty related protein
           Fft1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
 Frame = +3

Query: 15  NWICLNYKEKL--MKCQ*KNAKRPLDSLSRL*LWKIRVYVSMHYVACPVLILNGSWIN*S 188
           NW+CL YK KL  +        +    +S L   K +   + H V  P   L G+W+   
Sbjct: 423 NWLCLMYKAKLSGILADEMGLGKTCQVISFLASLKEKGIQNRHLVVVPSSTL-GNWLREF 481

Query: 189 RKDCP 203
            K CP
Sbjct: 482 EKFCP 486


>SPAC3G9.07c |hos2|hda1, phd1|histone deacetylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 7/25 (28%), Positives = 17/25 (68%)
 Frame = -2

Query: 385 CFVVTCWLEDTIPSKIPRTSRFYDY 311
           C+  +  + + IPS++PR + +Y++
Sbjct: 331 CYETSICVNEQIPSELPRETLYYEF 355


>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 796

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -3

Query: 417 KFFSVFGNSAYVLL*PAGWKTQSHPKSL 334
           +F SV GN  Y++     W+ +++ K+L
Sbjct: 365 RFVSVCGNGEYIVYTALAWRNKAYGKAL 392


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,104,513
Number of Sequences: 5004
Number of extensions: 44874
Number of successful extensions: 108
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)