Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS324G07f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    26   0.20 
DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.              23   2.5  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   7.7  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 26.2 bits (55), Expect = 0.20
 Identities = 22/57 (38%), Positives = 25/57 (43%)
 Frame = -3

Query: 207 NLGSPSGFNLSRNHLI*GPGRPHNALKHKLVSSTITACLRSRAASWHFFIDTSSISP 37
           N+   SG NL    L     RP   L  K   +T+T CLRS  A     I   SISP
Sbjct: 142 NINDASGLNL----LPMNRNRPAY-LASKCALTTLTDCLRSELAQCESNIKVISISP 193


>DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.
          Length = 135

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 17/54 (31%), Positives = 23/54 (42%)
 Frame = +3

Query: 216 DGRINLL*PSALLPIVVVRKIMSFCSKDEQKE*S*NREVRGILDGIVSSNQQVT 377
           DG+IN+   +  L I    K  SF  KD       +RE+  I       NQ +T
Sbjct: 49  DGKINIEDENVQLYIECAMKKFSFVDKDGNFNEHVSREIAKIFLNENEINQLIT 102


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +2

Query: 374 YNKTYAELPKTEKNL 418
           YNK Y +   TEK L
Sbjct: 446 YNKNYTKFCSTEKRL 460


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,695
Number of Sequences: 438
Number of extensions: 3461
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)