Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS324G06f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    32   0.045
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    32   0.060
SPCC306.07c |||U3 snoRNP-associated protein Cic1/Utp30 family|Sc...    30   0.18 
SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha su...    26   3.0  
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom...    26   3.9  
SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom...    25   5.2  
SPBC3H7.10 |||elongator homolog|Schizosaccharomyces pombe|chr 2|...    25   5.2  
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    25   9.0  

>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1727

 Score = 32.3 bits (70), Expect = 0.045
 Identities = 32/134 (23%), Positives = 63/134 (47%), Gaps = 5/134 (3%)
 Frame = +3

Query: 105  VCKILATELQNRLEETGKVHEVIEIGYSLDDVQPKKKTKYQKSELRLIESLE-GVCDRVL 281
            V K+  ++LQN ++   K  E+I     L  ++ KK  +  +S  R+I  L+ G+ ++ +
Sbjct: 1156 VMKLGLSDLQNHVKRISKEMEIISCQRQLLFLENKKLKRTVESSNRVIADLQRGITEKDV 1215

Query: 282  EYNIHK--ERSDSTRFAKGMSQTFKTLHGLVDKGVKV--DLGIPLELWDKPSAEITHMKT 449
                    ERS+       ++++ K+L   +++  +V  +L   +E      A     K 
Sbjct: 1216 SSTSESVGERSNYLNMVALLNESNKSLRENLERNEEVITELREKIETLKTDLANFRLNKE 1275

Query: 450  QCESLLEENEIAVE 491
            Q ES L+  + AV+
Sbjct: 1276 QLESQLQTEKAAVK 1289


>SPCC162.08c |nup211||nuclear pore complex associated
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 31.9 bits (69), Expect = 0.060
 Identities = 16/68 (23%), Positives = 31/68 (45%)
 Frame = +3

Query: 48  DNDIKSEEDVGVKYANRCEVCKILATELQNRLEETGKVHEVIEIGYSLDDVQPKKKTKYQ 227
           + +I S++ +   +  +CE C +   ELQN   E  K+ E  +  +       K+     
Sbjct: 288 EKEISSQKQISELWMEKCEDCSLRLKELQNSNGELEKLLEAAQSSFEEQLESHKEAEASL 347

Query: 228 KSELRLIE 251
           KS++  +E
Sbjct: 348 KSQINFLE 355


>SPCC306.07c |||U3 snoRNP-associated protein Cic1/Utp30
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 284

 Score = 30.3 bits (65), Expect = 0.18
 Identities = 23/63 (36%), Positives = 34/63 (53%)
 Frame = +3

Query: 99  CEVCKILATELQNRLEETGKVHEVIEIGYSLDDVQPKKKTKYQKSELRLIESLEGVCDRV 278
           C + K      Q+ +E+ G + EVI    S+  ++ K KT  +K ELR   +L  V DRV
Sbjct: 79  CLIVKDSQQTYQDLVEQQG-LDEVITKVLSIPRLKLKYKTIREKCELRDSHNLFLVDDRV 137

Query: 279 LEY 287
           L+Y
Sbjct: 138 LKY 140


>SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha
           subunit Tfa1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 448

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +3

Query: 120 ATELQNRLEETGKVHEVIEIGYSLDDVQPKK-KTKYQKSELRLIESLEGVCD 272
           AT LQN+  + G V    E   S  D+Q K+ K+  + + L  I S  G+ D
Sbjct: 364 ATSLQNKSTDYGSVKRKTENLNSDSDIQNKRTKSIEENNSLPPIVSTNGITD 415


>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 649

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +3

Query: 141 LEETGKVHEVIEIGYSLDDVQPKKKTKYQKSELRLIESLEGV 266
           L E  K +  + + Y+     PKKK +  K E  L+ ++EG+
Sbjct: 115 LSERAKQYGRLGVDYAQVGDAPKKKIREMKLENGLLRNVEGI 156


>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1188

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +3

Query: 375 GVKVDLGIPLELWDKPSAEITHMKTQCESLLE 470
           G+K  +G PL +W +    +  ++ +CE + E
Sbjct: 359 GIKGTVGFPLPIWVEIKGFVARIRFRCELMPE 390


>SPBC3H7.10 |||elongator homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 249

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = +3

Query: 309 DSTRFAKGMSQTFKTLHGLVDKGVKVDLGIPLELWDKPSAEITHMKTQCES 461
           DST+  + + +  K    ++   V V LG PL       + I HM T+C S
Sbjct: 141 DSTKIQQAILELRKCFSRVI---VNVTLGAPLPQQKSLGSSIGHMATRCIS 188


>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -3

Query: 321 ILCYRTFLCEYCIPILYHTHPLKIRLT 241
           ++C    LC  C+  ++H H   +RLT
Sbjct: 228 LVCEDYDLCSSCVSHVHHDHHSMLRLT 254


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,108,745
Number of Sequences: 5004
Number of extensions: 43299
Number of successful extensions: 137
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)