Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS324G06f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0124 + 901034-901153,901455-901481,901713-901792,903739-90... 44 6e-05
04_04_1441 - 33621423-33622118,33622251-33622315,33623140-336232... 31 0.56
10_06_0105 - 10790092-10790323,10791092-10791234,10791322-107914... 29 2.3
01_06_1763 + 39723596-39723691,39724030-39724672,39724773-397252... 28 4.0
02_05_1332 + 35758657-35758728,35758959-35760689 28 5.2
03_05_0744 + 27336697-27337131,27337329-27337787,27340852-273424... 27 6.9
07_03_0169 + 14670994-14673714,14673799-14673879,14675460-146756... 27 9.1
04_04_1379 + 33113374-33113529,33114046-33114143,33114811-331148... 27 9.1
02_05_1293 - 35520733-35520963,35521696-35521878,35522040-355222... 27 9.1
>02_01_0124 +
901034-901153,901455-901481,901713-901792,903739-903811,
904015-904072,904561-904615,905140-905164,905361-905421,
907416-907531,907661-907812,907918-908003,908182-908309,
908451-908501,908774-908860,908964-909033,909351-909407,
909729-909865,910313-910390,910971-911057
Length = 515
Score = 44.4 bits (100), Expect = 6e-05
Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 2/89 (2%)
Frame = +3
Query: 93 NRCEVCKILATELQNRLE-ETGKVHEVIEIGYSLDDVQPKKKTKYQKSELRLIESLEGVC 269
++C CK +A EL+ + E + H + + + K Y+ SELR++E L+G+C
Sbjct: 31 DKCAACKAVAAELEIGISSEKPRNHLDLRNRLNSKGQREGKVIDYRVSELRVVELLDGLC 90
Query: 270 DRVLEYNIHKERSDSTRFAKGMS-QTFKT 353
D++ +Y + K S + K +FKT
Sbjct: 91 DKMQDYTLQKLESGEKGWVKVADWNSFKT 119
>04_04_1441 -
33621423-33622118,33622251-33622315,33623140-33623227,
33623957-33625570
Length = 820
Score = 31.1 bits (67), Expect = 0.56
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +3
Query: 171 IEIGYSLDDVQPKKKTKYQKSELRLIE-SLEGVCDRVLEYNIHKERSDSTRFAK 329
+E G LD+V+ +KK K + + L+E EG D E + KE+ + + K
Sbjct: 314 VENGMDLDEVKVEKKKKKKAKKASLVEGETEGAKDSKQEKKVKKEKKEKKKKKK 367
>10_06_0105 -
10790092-10790323,10791092-10791234,10791322-10791429,
10791796-10791903,10793133-10797686,10798347-10798461,
10799597-10799724,10799843-10800043,10800158-10800227,
10801233-10801314,10801433-10801556,10801761-10801778
Length = 1960
Score = 29.1 bits (62), Expect = 2.3
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +3
Query: 339 QTFKTLHGLVDKGVKVDLGIPLELWDKPSAEITHMKTQCESLLEE 473
Q F G +G+ LG+ L ++ SAE++ ++T+C +L E
Sbjct: 380 QDFTDKLGTETQGLAQQLGVELMSRNQLSAEVSSLRTECSNLKRE 424
>01_06_1763 +
39723596-39723691,39724030-39724672,39724773-39725275,
39725786-39725905,39726356-39726421,39727146-39727256,
39727650-39727726,39727996-39728063,39728384-39728497,
39728593-39728774,39728926-39728994,39729294-39729449,
39729657-39729734
Length = 760
Score = 28.3 bits (60), Expect = 4.0
Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 5/90 (5%)
Frame = +3
Query: 210 KKTKYQKSELRLIESLEGVCDRVLEY-----NIHKERSDSTRFAKGMSQTFKTLHGLVDK 374
K + + SEL+L + +EG+ + Y ++ KER + + + K LH K
Sbjct: 513 KALRLRSSELKLEKEIEGLSSEISSYRRKVSSLEKERQHLQSTVEALQEEKKLLH---SK 569
Query: 375 GVKVDLGIPLELWDKPSAEITHMKTQCESL 464
+ + + +KPSA+ T E L
Sbjct: 570 LRNTSVTEKVNIIEKPSADKRDASTATEDL 599
>02_05_1332 + 35758657-35758728,35758959-35760689
Length = 600
Score = 27.9 bits (59), Expect = 5.2
Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 2/75 (2%)
Frame = +3
Query: 18 LLSRNVICRDDNDIKSEEDV--GVKYANRCEVCKILATELQNRLEETGKVHEVIEIGYSL 191
++ N + + E+DV G + ++ A + LEE V E Y +
Sbjct: 505 IVGMNTEGNGEEAFQPEDDVVYGDSLSPADDIAAEAADDASRELEEQQDVETAEEYDYEM 564
Query: 192 DDVQPKKKTKYQKSE 236
DDV ++ YQ+ E
Sbjct: 565 DDVNAAEENDYQEYE 579
>03_05_0744 +
27336697-27337131,27337329-27337787,27340852-27342418,
27342641-27343044
Length = 954
Score = 27.5 bits (58), Expect = 6.9
Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = +3
Query: 15 ALLSRNVICR--DDNDIKSEEDVGVKYANRCEVCKILATELQNRLEETGKVHE 167
+LL + V+ D+++I ED+G+K RC+ + + L GK +
Sbjct: 293 SLLKKQVVLNEGDESEIDGLEDIGLKIVERCDGLPLAIKVVGGLLLNKGKTRD 345
>07_03_0169 +
14670994-14673714,14673799-14673879,14675460-14675612,
14675910-14676073,14676162-14676309,14676426-14676548,
14676754-14676841,14677493-14677674
Length = 1219
Score = 27.1 bits (57), Expect = 9.1
Identities = 28/126 (22%), Positives = 50/126 (39%)
Frame = +3
Query: 78 GVKYANRCEVCKILATELQNRLEETGKVHEVIEIGYSLDDVQPKKKTKYQKSELRLIESL 257
G +Y ++C T LQ+ +++ H+ + G ++ QP + QK++L +SL
Sbjct: 409 GYRYTSQCTPYSG-TTSLQSFDQQS--YHDSMMEGSMKEEKQPSVRVPLQKNDLDYFQSL 465
Query: 258 EGVCDRVLEYNIHKERSDSTRFAKGMSQTFKTLHGLVDKGVKVDLGIPLELWDKPSAEIT 437
E + V IH + S + + T GL D LE + A
Sbjct: 466 ENMSVPV----IHHDSSSTNYMNSDVPVTTSIQEGLKSSLQPSDSAKSLETYTASKAMSA 521
Query: 438 HMKTQC 455
++C
Sbjct: 522 AQDSEC 527
>04_04_1379 +
33113374-33113529,33114046-33114143,33114811-33114880,
33116668-33116800,33116981-33118940,33119016-33119076,
33119554-33120057
Length = 993
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = +3
Query: 144 EETGKVHEVIEIGYSLDDVQPKKKTKYQKSELRLIESLEGVCDR 275
E +GK E++ + ++ ++ K +K+ L+LIE +EGV R
Sbjct: 540 ESSGK--ELVTVDGPIETSDQLRQHKIEKAVLKLIELIEGVVQR 581
>02_05_1293 -
35520733-35520963,35521696-35521878,35522040-35522255,
35522936-35523022,35523125-35523331,35523426-35523650,
35523743-35523798,35524009-35524115,35524443-35525470
Length = 779
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -2
Query: 514 P*WFQYQSSTAISFSSKRLSHCVF 443
P W+Q+ SS+AI +K S C F
Sbjct: 152 PWWWQWSSSSAIPSRTKEASFCFF 175
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,467,130
Number of Sequences: 37544
Number of extensions: 241251
Number of successful extensions: 672
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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