Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS324G03f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit Ssr4|Schizos... 30 0.18
SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit |... 29 0.56
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 28 0.97
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 27 1.3
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 1.7
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr... 27 2.2
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces... 27 2.2
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo... 26 3.0
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 26 3.9
SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41 |Schizosacch... 22 5.1
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 25 5.2
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni... 25 6.8
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc... 25 6.8
SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomy... 25 6.8
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc... 25 6.8
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch... 25 6.8
SPCC777.05 |gtr2||Gtr1/RagA G protein Gtr2|Schizosaccharomyces p... 25 6.8
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa... 25 9.0
SPAC222.11 |hem13||coproporphyrinogen III oxidase |Schizosacchar... 25 9.0
>SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit
Ssr4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 395
Score = 30.3 bits (65), Expect = 0.18
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = +1
Query: 367 ATSAGKPLLSAPVSQRRNLQTRSQLLDEPHLRLPLGLCRSLVSDASRIRPE 519
AT A + LLS PV R + R+ L P +LP+ +++ AS+ P+
Sbjct: 3 ATMAAQSLLSIPVEYRSQVWCRANLPYPPAPQLPIPAVVDILTKASQALPQ 53
>SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 661
Score = 28.7 bits (61), Expect = 0.56
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = -3
Query: 171 ALLFNTTSLMHPLKPPLTPALGFTTTVESST-PPTNIGVSNRRLSAGLSKPS 19
AL+F+ M+P+K PLTP T T T I NRR ++ PS
Sbjct: 537 ALIFSLAQGMNPMKMPLTPRRASTGPRPRPTFQLTEIDSPNRRRASDCITPS 588
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 27.9 bits (59), Expect = 0.97
Identities = 18/48 (37%), Positives = 22/48 (45%)
Frame = +2
Query: 287 TESTNCICPPGYTGSYCETRIASYLMSPPPPVNPCSLHPCRNGGTCKP 430
T S + + PP T S T A + SPPPP + HP GT P
Sbjct: 901 TSSVSTLPPPPPTASM--TASAPAIASPPPPKVGETYHPPTASGTRVP 946
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 27.5 bits (58), Expect = 1.3
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Frame = -3
Query: 177 STALLFNTTSLMH---PLKPPLTPALGFTTTVESSTPPTNI 64
S++ +NT+SL+ P PL+ A T T SSTP T++
Sbjct: 271 SSSAQYNTSSLLPSSTPSSTPLSSANSTTATSASSTPLTSV 311
Score = 26.6 bits (56), Expect = 2.2
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = -3
Query: 159 NTTSLMHPLKPPLTPALGFTTTVESSTPPTNIGVSNRRLSAGLS 28
N+T+ PLT TTT SSTP +++ +N + S
Sbjct: 296 NSTTATSASSTPLTSVNSTTTTSASSTPLSSVSSANSTTATSTS 339
Score = 25.0 bits (52), Expect = 6.8
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Frame = -3
Query: 177 STALLFNTTSLM---HPLKPPLTPALGFTTTVESSTPPTNI 64
STA +NT+S++ PL+ A T T SSTP T++
Sbjct: 518 STAPSYNTSSVLPTSSVSSTPLSSANSTTATSASSTPLTSV 558
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.1 bits (57), Expect = 1.7
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +2
Query: 350 ASYLMSPPPPVNPCSLHPCRNGGTCKP 430
+S + +PPPPV P + P N +P
Sbjct: 1372 SSNVHAPPPPVQPMNAMPSHNAVNARP 1398
>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 26.6 bits (56), Expect = 2.2
Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 1/98 (1%)
Frame = +2
Query: 38 AESLRFETPMFVGGVDDSTVVVNPNAGVSGGFSGCIKDVVLNSNAVDINSSIKSSNIQEC 217
AES R +TP + G+ DS+ V N N S +++ +SN + +N + +E
Sbjct: 397 AESPRTDTPREINGLVDSS-VTNGNEKFS-------VEIMNDSNKIGLNPKSFTDEEREI 448
Query: 218 NTYDRG-DIQASESCQCENGGSCSTESTNCICPPGYTG 328
T R ++ S NG S + + + + PP G
Sbjct: 449 LTLFRNPPMRLSSEPPSSNGFSIAHPNNSPLRPPSLQG 486
>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 681
Score = 26.6 bits (56), Expect = 2.2
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = -3
Query: 159 NTTSLMHPLKPPLTPALGFTTTVESSTPPTNIGVSNRRLSAGLSKP 22
N+ HP +PP PA + T PT I S +S+G S P
Sbjct: 200 NSIKSAHPAEPPKRPAFTRSATSPDKILPTRI-KSKDTVSSGDSTP 244
>SPAC23D3.13c |||guanyl-nucleotide exchange
factor|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1616
Score = 26.2 bits (55), Expect = 3.0
Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = -3
Query: 186 EFMSTALLFNTTSLMHPLKPPLTPALGFTTTVESSTPPTNI--GVSNRRLSAGL 31
EF+ + L T+S +HP++ P F + S+ ++ +NR +S G+
Sbjct: 712 EFLESLLAVITSSSVHPIQTLTAPRQSFNEDLLSANTKNSVYKTSANRSISGGI 765
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 25.8 bits (54), Expect = 3.9
Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Frame = +2
Query: 347 IASYLMSPPPPVNPCSL-HPCRNGGTCKPDRNSWMNHTCDCP 469
+ S + PPPP P P N T +S M H+ D P
Sbjct: 266 LGSQVNIPPPPATPSQPPRPPTNASTRSTGTSSSMAHSYDSP 307
>SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 638
Score = 21.8 bits (44), Expect(2) = 5.1
Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = +2
Query: 155 VLNSNAVDINSSIKSSN-IQECNTYDRGDIQAS 250
+LNS+ ++S++ IQE T+D GD++A+
Sbjct: 32 ILNSSL--LSSAVHGERLIQERPTHDFGDVEAT 62
Score = 21.8 bits (44), Expect(2) = 5.1
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = +2
Query: 329 SYCETRIASYLMSPPPPVNPCSLHP 403
++C+ +YL+ PP SLHP
Sbjct: 103 TWCDDNRLNYLVKYIPPGIRVSLHP 127
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 25.4 bits (53), Expect = 5.2
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -3
Query: 147 LMHPLKPPLTPALGFTTTVESSTPPTNI 64
+M P KPPL+P G + S T PTN+
Sbjct: 172 IMSPQKPPLSPFGGSRDRLVSET-PTNM 198
>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 2199
Score = 25.0 bits (52), Expect = 6.8
Identities = 10/39 (25%), Positives = 20/39 (51%)
Frame = +2
Query: 140 CIKDVVLNSNAVDINSSIKSSNIQECNTYDRGDIQASES 256
C K+++L + VD + ++ TY G +++ ES
Sbjct: 511 CTKNIILPNKHVDASQKFFDGHLLASETYVGGHVESLES 549
>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
Apc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1458
Score = 25.0 bits (52), Expect = 6.8
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = -3
Query: 174 TALLFNTTSLMHPLKPPLTPALGFTTTVESSTPPTNIGVS 55
T LFN T +HP + P F T + P N+GV+
Sbjct: 770 TPRLFNFTLHLHPGTLIIQPNKEFVTQELTEWPEFNVGVA 809
>SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 454
Score = 25.0 bits (52), Expect = 6.8
Identities = 8/21 (38%), Positives = 15/21 (71%)
Frame = -2
Query: 154 DILNASAEAAADAGVRVHYHG 92
++L+++A+ AA + HYHG
Sbjct: 404 EVLSSTADPAAKGKIESHYHG 424
>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1238
Score = 25.0 bits (52), Expect = 6.8
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +2
Query: 158 LNSNAVDINSSIKSSNIQECNTYDRGDIQASESCQCENG 274
+NSN I SSI SNI + Y + +S S Q +G
Sbjct: 226 VNSNHSSIPSSITKSNISSLDVYGSEKLISSGSQQPGHG 264
>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 297
Score = 25.0 bits (52), Expect = 6.8
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +2
Query: 257 CQCENGGSCSTESTNC 304
C E G CSTE T+C
Sbjct: 256 CSQEKKGCCSTEKTSC 271
>SPCC777.05 |gtr2||Gtr1/RagA G protein Gtr2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 314
Score = 25.0 bits (52), Expect = 6.8
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Frame = -2
Query: 160 QHDILNASAEAAADAG---VRVHYHGGIVDSAHEHRSLEPEAFSRSIQTLVP 14
Q DI + + AD G V + +H + S +H E AFSR IQ L+P
Sbjct: 132 QRDIQQRTQDELADIGLENVPISFH---LTSIFDHSIFE--AFSRVIQKLIP 178
>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 759
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = +2
Query: 53 FETPMFVGGVDDSTVVVNPNAGVSGGFSGCIKDVVLNSNAV 175
FE+ +F ST ++P VSG C +V +A+
Sbjct: 196 FESTVFPWNKTSSTFELDPTISVSGMSDECFASIVQKFSAI 236
>SPAC222.11 |hem13||coproporphyrinogen III oxidase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 312
Score = 24.6 bits (51), Expect = 9.0
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +2
Query: 8 RIRHEGLDRPAESLRFETPMFVGGVDDSTVVVNP 109
R HEG+DR A+ E P F G+ ++V++P
Sbjct: 83 RANHEGIDRTAK----ELPFFAAGI---SMVIHP 109
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,155,954
Number of Sequences: 5004
Number of extensions: 44039
Number of successful extensions: 179
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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